Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 2.1e-200 702.2 372 100.0
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-171 606.7 360 85.8
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-171 605.9 366 84.7
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-170 602.4 335 89.9
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.9e-169 599.4 369 84.3
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.3e-168 596.7 364 84.3
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-167 592.0 393 79.6
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 5.3e-167 591.3 334 88.6
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 9.0e-167 590.5 325 90.5
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.5e-166 589.7 338 87.3
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-165 587.0 351 84.6
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.6e-163 579.7 370 82.7
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 7.9e-163 577.4 342 86.5
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.0e-162 577.0 357 82.6
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.3e-162 575.9 339 85.0
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 6.7e-162 574.3 366 80.9
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 7.4e-161 570.9 365 82.5
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 7.4e-161 570.9 366 82.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 7.4e-161 570.9 371 81.1
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.6e-160 569.7 330 86.7
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.1e-160 569.3 374 81.3
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.8e-160 568.9 331 86.1
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 2.8e-160 568.9 363 82.1
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 4.8e-160 568.2 355 80.8
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 6.3e-160 567.8 363 79.1
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 8.2e-160 567.4 366 80.6
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 5.3e-159 564.7 369 78.3
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 9.0e-159 563.9 334 84.7
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 9.0e-159 563.9 354 79.7
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 2.0e-158 562.8 358 78.8
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 5.9e-158 561.2 340 82.1
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.0e-157 560.5 335 83.9
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.0e-157 560.5 335 83.9
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 5.0e-157 558.1 316 87.7
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 2.5e-156 555.8 365 78.1
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.2e-156 555.4 368 76.1
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.2e-156 555.4 368 76.1
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.1e-155 552.7 330 84.5
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 4.6e-155 551.6 334 82.9
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 6.1e-155 551.2 359 78.8
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 8.7e-154 547.4 332 82.8
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.5e-153 545.8 351 78.3
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 2.5e-153 545.8 335 83.6
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 3.3e-153 545.4 332 80.7
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 3.3e-153 545.4 344 80.8
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 4.3e-153 545.0 361 78.9
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.6e-152 543.1 350 78.3
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.8e-152 542.3 320 85.0
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 6.3e-152 541.2 361 76.7
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 6.3e-152 541.2 291 92.8
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 8.2e-152 540.8 361 79.2
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.1e-151 540.4 365 75.1
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 2.4e-151 539.3 360 76.1
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 3.1e-151 538.9 319 83.4
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 3.1e-151 538.9 352 81.0
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 9.0e-151 537.3 369 74.8
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 9.0e-151 537.3 355 77.7
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 9.0e-151 537.3 357 77.3
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.6e-150 535.8 333 80.5
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.4e-150 535.4 362 76.0
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 4.5e-150 535.0 333 80.5
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.3e-149 533.5 361 74.0
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.7e-149 533.1 360 75.0
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.9e-149 532.3 372 73.9
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 5.0e-149 531.6 341 78.0
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.4e-148 530.0 359 76.0
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 5.5e-148 528.1 366 74.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 7.2e-148 527.7 366 73.8
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 9.4e-148 527.3 366 73.8
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 3.6e-147 525.4 336 78.0
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.3e-146 522.7 366 73.5
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.3e-146 522.7 366 73.5
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.3e-146 522.7 366 73.5
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-146 522.3 319 83.1
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 5.1e-146 521.5 357 74.8
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 5.1e-146 521.5 366 72.7
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 6.7e-146 521.2 366 72.7
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 6.7e-146 521.2 366 72.7
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 6.7e-146 521.2 366 72.7
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.5e-145 520.0 364 73.6
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.5e-145 520.0 342 81.6
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.6e-145 519.2 323 78.3
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 3.3e-145 518.8 357 74.5
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 3.3e-145 518.8 357 74.5
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 4.4e-145 518.5 340 77.4
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 9.7e-145 517.3 366 72.7
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.8e-144 515.8 359 72.7
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 6.3e-144 514.6 359 73.0
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 6.3e-144 514.6 347 76.9
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.2e-144 514.2 361 74.5
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.8e-143 513.1 334 76.9
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 6.9e-143 511.1 343 74.6
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 7.7e-142 507.7 338 77.8
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.7e-141 506.5 330 76.4
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.9e-141 505.8 361 73.7
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 2.9e-141 505.8 382 73.0
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 8.5e-141 504.2 300 80.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.1e-140 503.8 342 74.9
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.5e-137 493.4 354 73.2
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 3.3e-137 492.3 366 70.2
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 8.2e-136 487.6 311 76.8
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 8.2e-136 487.6 397 66.2
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 4.1e-135 485.3 305 81.0
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 7.0e-135 484.6 309 76.7
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 5.9e-134 481.5 333 74.2
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 6.5e-133 478.0 300 76.7
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.5e-132 474.9 362 66.9
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 7.2e-132 474.6 378 68.8
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.3e-130 469.5 314 73.9
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 4.8e-128 461.8 317 70.3
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.8e-127 459.9 268 86.6
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 5.3e-127 458.4 318 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.6e-126 456.8 323 68.7
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.0e-126 456.4 280 81.4
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 5.9e-126 454.9 361 70.1
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 7.7e-126 454.5 366 67.5
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 7.7e-126 454.5 405 63.5
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.7e-123 446.0 324 71.9
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 6.8e-122 441.4 325 67.4
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 4.8e-120 435.3 294 72.8
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.2e-115 420.6 362 63.3
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.9e-112 408.7 362 60.2
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.9e-112 408.7 362 60.2
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 8.3e-112 407.9 245 80.4
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 3.1e-111 406.0 319 65.2
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.1e-111 405.6 240 82.9
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.6e-110 403.7 308 69.2
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 3.8e-109 399.1 305 67.2
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 8.6e-109 397.9 335 63.6
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 8.6e-109 397.9 235 85.1
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 2.9e-96 356.3 233 77.7
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.2e-91 340.9 230 75.2
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.8e-91 339.7 367 52.6
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 4.7e-91 339.0 206 77.7
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.2e-89 334.3 238 74.4
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.9e-79 300.4 197 78.2
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.9e-76 290.4 262 63.4
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 7.8e-70 268.5 185 76.8
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.5e-65 254.2 172 72.1
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.4e-63 247.7 167 77.8
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.3e-45 187.2 127 71.7
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.1e-42 176.8 133 65.4
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.0e-42 175.3 133 65.4
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.4e-39 167.9 124 66.9
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 1.9e-36 157.5 117 75.2
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.2e-35 152.1 81 85.2
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 9.1e-34 148.7 145 56.6
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.6e-33 147.1 124 66.1
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.9e-32 143.7 97 74.2
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 6.1e-30 136.0 118 66.9
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.7e-27 126.7 291 27.5
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.4e-25 120.2 88 71.6
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.2e-23 113.2 86 64.0
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.4e-21 108.2 79 75.9
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 1.1e-18 98.6 74 64.9
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-17 95.1 73 72.6
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.6e-17 94.7 56 69.6
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.0e-17 94.4 80 57.5
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 4.2e-15 86.7 52 71.2


User provided reference genes

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