Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 0.0e+00 1154.4 582 100.0
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.5e-216 755.7 658 66.3
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 3.8e-196 688.7 672 59.8
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-195 686.8 672 59.7
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 3.4e-189 665.6 659 59.6
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.0e-185 654.1 648 58.2
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.5e-184 650.2 649 58.7
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 7.0e-182 641.3 648 57.3
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 2.2e-180 636.3 652 57.2
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 5.5e-179 631.7 658 57.3
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 2.1e-178 629.8 652 56.4
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.4e-177 627.1 648 55.6
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 6.7e-177 624.8 647 55.3
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 2.0e-176 623.2 648 56.2
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 9.7e-176 620.9 669 54.6
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 3.7e-175 619.0 649 55.8
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.8e-174 616.7 651 56.5
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 7.0e-174 614.8 655 55.4
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 1.6e-173 613.6 649 55.5
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 3.5e-173 612.5 653 55.3
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.3e-172 610.5 648 55.4
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.7e-172 610.1 655 55.7
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 5.0e-172 608.6 655 54.4
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.5e-171 607.1 654 54.7
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.5e-171 607.1 653 56.0
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 2.5e-171 606.3 655 54.2
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.6e-170 602.4 656 53.8
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.8e-169 600.1 653 55.0
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 2.8e-167 592.8 645 53.6
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 4.1e-166 589.0 651 54.2
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 5.4e-166 588.6 651 53.8
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 9.1e-166 587.8 648 53.4
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 9.1e-166 587.8 628 53.8
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 5.9e-165 585.1 653 53.0
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.0e-164 584.3 647 53.5
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.8e-164 582.4 652 53.5
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.9e-163 580.1 650 52.0
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 7.2e-163 578.2 651 53.0
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.8e-162 576.2 622 52.4
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.8e-161 573.5 653 52.8
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.8e-161 573.5 634 53.0
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 4.0e-161 572.4 652 53.7
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 1.3e-159 567.4 655 51.1
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 6.3e-159 565.1 606 55.6
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 8.3e-159 564.7 658 51.4
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.8e-158 563.5 643 51.5
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.8e-158 563.5 649 52.1
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 7.0e-158 561.6 606 55.9
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 3.5e-157 559.3 656 51.7
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 5.9e-157 558.5 644 50.5
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.0e-156 557.8 626 51.3
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 3.8e-156 555.8 653 51.0
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.5e-155 553.1 653 51.6
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 2.5e-155 553.1 661 52.2
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 7.3e-155 551.6 624 52.4
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 1.6e-154 550.4 647 51.0
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.6e-154 549.3 653 51.0
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.4e-153 547.4 647 48.8
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.0e-153 545.8 653 50.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 4.4e-152 542.3 653 49.3
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 5.7e-152 542.0 664 49.7
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 5.7e-152 542.0 653 48.5
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 5.7e-152 542.0 647 50.7
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 6.4e-151 538.5 656 48.3
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 8.3e-151 538.1 653 50.1
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.4e-150 537.3 619 51.5
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 4.1e-150 535.8 656 48.2
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 9.2e-150 534.6 628 50.8
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 1.6e-149 533.9 651 49.0
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.0e-148 531.2 627 49.6
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.7e-148 530.4 692 46.2
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.3e-148 530.0 664 47.4
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.1e-147 527.7 648 47.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.9e-147 526.9 653 49.3
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 9.5e-147 524.6 654 48.9
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 3.6e-146 522.7 651 48.8
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.8e-145 520.4 659 46.3
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.2e-144 517.7 662 49.4
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.2e-144 517.7 652 48.6
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 4.4e-144 515.8 744 43.8
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.3e-143 514.2 619 49.6
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.3e-143 514.2 647 47.9
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 2.2e-143 513.5 619 49.4
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.2e-143 513.5 660 48.3
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.7e-143 512.7 653 48.5
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 4.9e-143 512.3 619 49.9
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 7.0e-142 508.4 640 48.3
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.0e-140 502.3 645 48.5
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.5e-139 500.7 666 46.7
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.5e-139 500.0 645 48.4
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 3.6e-138 496.1 628 48.4
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 6.8e-137 491.9 620 46.9
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 2.2e-135 486.9 710 44.2
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.4e-134 482.3 659 44.9
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 5.4e-134 482.3 644 46.1
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 9.2e-134 481.5 630 45.9
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.3e-132 477.6 758 40.2
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 7.6e-128 461.8 629 46.1
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 6.4e-127 458.8 546 50.4
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.4e-121 440.3 620 44.5
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.2e-120 438.0 619 45.4
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.4e-118 430.3 633 44.1
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.0e-116 424.9 619 41.7
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 3.9e-116 422.9 624 41.2
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 4.3e-115 419.5 619 42.3
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.9e-100 369.8 402 53.2
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.3e-99 366.7 405 51.9
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 2.2e-95 354.0 343 53.6
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.3e-94 348.6 404 50.5
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.0e-92 343.6 400 50.2
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.1e-91 341.7 518 42.3
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 3.3e-91 340.1 351 52.1
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.6e-88 330.5 398 49.7
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.5e-87 325.9 404 47.8
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.3e-84 318.2 409 48.2
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.7e-83 312.0 404 46.8
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.2e-82 310.8 406 46.8
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 8.8e-76 288.9 219 68.0
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.2e-70 270.4 402 42.8
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 7.0e-65 252.7 463 37.8
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 8.5e-63 245.7 337 44.5
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.6e-61 241.5 530 34.3
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 1.4e-60 238.4 168 70.8
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 8.0e-53 212.6 483 29.6
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 4.0e-52 210.3 482 30.5
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.0e-51 208.0 448 35.3
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 3.4e-43 180.6 213 53.5
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.0e-40 171.4 494 28.1
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 5.9e-40 169.9 497 27.6
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.6e-39 166.4 175 53.1
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 9.5e-38 162.5 221 43.4
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.2e-35 155.6 103 71.8
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 9.8e-35 152.5 380 35.5
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.0e-31 142.5 101 70.3
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 2.1e-29 134.8 151 49.7
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 6.4e-26 123.2 522 22.4
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.3e-23 115.5 80 70.0
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 6.6e-23 113.2 86 60.5
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.9e-22 111.7 123 50.4
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.1e-21 108.2 93 54.8
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 1.2e-19 102.4 69 68.1
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 1.2e-19 102.4 69 68.1
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.6e-19 101.3 99 56.6
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.6e-19 101.3 83 60.2
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 4.9e-18 97.1 109 47.7
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 1.1e-17 95.9 69 65.2
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 7.3e-14 83.2 70 55.7
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 6.2e-13 80.1 147 39.5
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 5.2e-12 77.0 44 75.0
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 5.2e-12 77.0 44 75.0
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.2e-11 75.9 52 67.3
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.9e-09 68.6 181 34.3
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 3.2e-09 67.8 53 58.5
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 1.3e-07 62.4 75 48.0


User provided reference genes

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