Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 2.4e-66 255.4 129 100.0
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 6.9e-58 227.3 123 91.1
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 2.6e-57 225.3 127 86.6
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 4.5e-57 224.6 127 86.6
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 1.0e-56 223.4 127 85.0
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 4.2e-55 218.0 121 88.4
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 5.5e-55 217.6 140 79.3
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 5.5e-55 217.6 140 79.3
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 7.2e-55 217.2 127 85.0
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.2e-54 216.5 115 92.2
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 3.6e-54 214.9 147 76.2
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 3.6e-54 214.9 147 76.2
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 4.7e-54 214.5 130 82.3
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 6.1e-54 214.2 122 84.4
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 6.1e-54 214.2 122 84.4
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 6.1e-54 214.2 122 84.4
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 6.1e-54 214.2 124 83.9
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.0e-53 213.4 130 83.1
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 1.0e-53 213.4 124 86.3
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 1.0e-53 213.4 117 90.6
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.4e-53 213.0 129 82.9
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.8e-53 212.6 124 86.3
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 8.8e-53 210.3 127 83.5
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.5e-52 209.5 126 81.7
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.4e-52 208.0 122 86.1
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 5.7e-52 207.6 121 83.5
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 7.4e-52 207.2 115 88.7
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 7.4e-52 207.2 129 80.6
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 2.2e-51 205.7 131 79.4
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 3.7e-51 204.9 129 80.6
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 4.8e-51 204.5 124 81.5
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 8.2e-51 203.8 128 78.9
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.1e-50 203.4 126 81.0
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.1e-50 203.4 125 80.0
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.1e-50 203.4 128 78.9
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 2.4e-50 202.2 128 78.9
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 3.1e-50 201.8 123 82.1
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 2.6e-49 198.7 128 78.1
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 2.6e-49 198.7 127 78.0
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 3.5e-49 198.4 119 79.0
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 4.5e-49 198.0 124 82.3
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 5.9e-49 197.6 119 84.0
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.3e-48 196.4 128 75.0
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 2.2e-48 195.7 121 84.3
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 2.9e-48 195.3 130 77.7
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 6.5e-48 194.1 114 82.5
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 1.1e-47 193.4 121 78.5
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.9e-47 192.6 114 84.2
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 1.9e-47 192.6 116 83.6
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 3.2e-47 191.8 116 82.8
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 3.2e-47 191.8 123 78.0
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 3.2e-47 191.8 125 74.4
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 4.2e-47 191.4 116 83.6
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 4.2e-47 191.4 122 77.0
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 4.2e-47 191.4 126 79.4
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 1.2e-46 189.9 121 81.0
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 2.1e-46 189.1 115 80.9
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 2.1e-46 189.1 116 81.9
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 3.6e-46 188.3 123 76.4
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 3.6e-46 188.3 116 80.2
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 8.0e-46 187.2 113 83.2
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 8.0e-46 187.2 121 80.2
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 1.4e-45 186.4 134 74.6
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.8e-45 186.0 116 80.2
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 2.3e-45 185.7 134 73.1
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 3.0e-45 185.3 128 72.7
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 8.8e-45 183.7 141 70.2
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 2.0e-44 182.6 113 82.3
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 3.3e-44 181.8 127 72.4
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 4.4e-44 181.4 116 77.6
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 7.5e-44 180.6 122 74.6
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 9.7e-44 180.3 132 70.5
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 1.3e-43 179.9 113 81.4
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-43 179.9 121 78.5
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 3.7e-43 178.3 117 76.1
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 4.8e-43 177.9 120 78.3
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.4e-42 175.6 119 73.9
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 3.1e-42 175.3 127 74.0
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.1e-42 174.9 115 79.1
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 4.1e-42 174.9 158 59.5
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 5.3e-42 174.5 119 73.1
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.2e-41 173.3 117 72.6
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.2e-41 173.3 119 72.3
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.5e-41 171.8 115 78.3
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 1.7e-40 169.5 126 67.5
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 1.7e-40 169.5 123 74.0
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 2.9e-40 168.7 119 73.1
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 2.5e-39 165.6 120 69.2
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 3.2e-39 165.2 116 69.8
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 3.2e-39 165.2 126 67.5
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 3.2e-39 165.2 115 69.6
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.2e-39 164.1 113 77.0
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.6e-38 162.9 139 65.5
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.7e-38 162.2 179 52.0
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 1.0e-37 160.2 107 73.8
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 4.0e-37 158.3 114 68.4
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 2.0e-36 156.0 118 65.3
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 7.5e-36 154.1 118 66.1
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 2.8e-35 152.1 159 55.3
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 8.3e-35 150.6 90 78.9
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 3.1e-34 148.7 125 61.6
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 7.0e-34 147.5 128 59.4
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 9.1e-34 147.1 118 69.5
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.2e-33 146.7 133 57.9
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 5.9e-33 144.4 124 62.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 7.7e-33 144.1 85 80.0
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.0e-32 143.7 131 58.8
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 5.0e-32 141.4 112 67.9
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 5.0e-32 141.4 70 95.7
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 5.0e-32 141.4 88 75.0
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.9e-31 139.4 112 67.0
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 2.5e-31 139.0 100 73.0
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 3.2e-31 138.7 132 59.1
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 4.2e-31 138.3 116 62.9
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 1.6e-30 136.3 133 55.6
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 3.6e-30 135.2 133 55.6
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 7.5e-28 127.5 101 63.4
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.8e-27 125.6 84 72.6
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 6.3e-27 124.4 105 61.0
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 1.1e-26 123.6 69 84.1
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.4e-26 123.2 179 43.0
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 1.6e-25 119.8 70 75.7
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 9.5e-23 110.5 116 56.0
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 3.4e-20 102.1 83 63.9
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 3.3e-15 85.5 60 70.0
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 8.0e-14 80.9 66 54.5
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-13 80.5 83 57.8
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 4.0e-13 78.6 48 72.9
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 8.9e-13 77.4 49 73.5
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-09 66.2 57 64.9
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 2.7e-09 65.9 66 56.1
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 7.3e-07 57.8 59 54.2


User provided reference genes

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