Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.7e-71 273.9 329 100.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.3e-64 249.6 329 95.7
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 5.7e-64 248.8 329 95.7
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.3e-60 237.7 330 93.6
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 3.2e-59 233.0 329 91.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 3.2e-59 233.0 330 93.0
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 9.4e-59 231.5 330 93.0
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 9.4e-59 231.5 318 93.1
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.6e-58 230.7 371 70.9
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.6e-58 230.7 330 92.7
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.6e-58 229.6 329 91.5
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 8.0e-58 228.4 328 92.4
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.8e-57 227.3 330 92.4
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.8e-57 227.3 321 93.1
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 2.3e-57 226.9 330 92.4
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 2.3e-57 226.9 330 92.4
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 2.3e-57 226.9 330 92.1
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.0e-57 226.5 329 89.7
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 3.9e-57 226.1 330 92.1
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 6.7e-57 225.3 318 92.1
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 6.7e-57 225.3 320 89.4
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 8.8e-57 224.9 320 94.1
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.1e-56 224.6 321 92.8
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.5e-56 224.2 330 91.5
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.5e-56 224.2 327 92.0
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.6e-56 223.4 327 91.7
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 2.6e-56 223.4 306 96.4
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 2.6e-56 223.4 306 96.4
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 3.3e-56 223.0 321 93.1
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.3e-56 223.0 327 91.4
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 3.3e-56 223.0 323 92.9
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.4e-56 222.6 324 91.7
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 4.4e-56 222.6 321 92.5
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 4.4e-56 222.6 329 90.3
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 4.4e-56 222.6 329 90.3
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 5.7e-56 222.2 329 91.2
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.4e-56 221.9 316 93.7
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.4e-56 221.9 329 88.4
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 7.4e-56 221.9 330 90.6
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 9.7e-56 221.5 330 90.6
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.3e-55 221.1 331 90.9
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.3e-55 221.1 329 89.4
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.7e-55 220.7 327 92.0
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 2.2e-55 220.3 324 92.0
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.8e-55 219.9 324 91.0
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.7e-55 219.5 329 90.9
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 6.3e-55 218.8 319 92.2
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 6.3e-55 218.8 322 92.9
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 8.2e-55 218.4 328 90.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.1e-54 218.0 319 91.5
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.8e-54 217.2 324 92.0
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.4e-54 216.9 328 90.9
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.4e-54 216.9 324 90.4
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.4e-54 216.9 332 90.1
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.1e-54 216.5 332 90.1
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 3.1e-54 216.5 325 87.1
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.1e-54 216.5 309 94.8
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 4.1e-54 216.1 324 89.2
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 4.1e-54 216.1 319 92.2
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 4.1e-54 216.1 332 81.0
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 5.3e-54 215.7 329 87.8
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 5.3e-54 215.7 327 90.5
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 5.3e-54 215.7 329 90.3
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.1e-54 214.9 321 90.3
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.6e-53 214.2 321 90.7
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.6e-53 214.2 321 90.7
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.6e-53 213.4 312 89.4
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 3.5e-53 213.0 327 89.0
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.9e-53 212.2 321 90.3
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.7e-53 211.8 325 90.5
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.7e-52 210.7 337 63.2
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.2e-52 210.3 297 96.0
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 5.0e-52 209.1 321 91.3
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 6.5e-52 208.8 321 91.6
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 8.5e-52 208.4 321 91.3
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 8.5e-52 208.4 321 91.3
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 8.5e-52 208.4 321 91.3
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 8.5e-52 208.4 321 91.3
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 8.5e-52 208.4 329 76.6
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 8.5e-52 208.4 322 89.1
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 8.5e-52 208.4 321 91.3
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.1e-51 208.0 321 91.3
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.1e-51 208.0 307 94.5
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.1e-51 208.0 250 90.0
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.5e-51 207.6 329 88.4
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.9e-51 207.2 322 89.1
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 321 91.0
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.5e-51 206.8 329 87.2
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.5e-51 206.8 321 91.0
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.5e-51 206.8 318 90.9
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 5.5e-51 205.7 325 90.5
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.5e-51 205.7 319 90.6
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 9.4e-51 204.9 318 87.7
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 9.4e-51 204.9 321 88.5
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.2e-50 204.5 335 80.3
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.1e-50 203.8 308 93.5
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.1e-50 203.8 321 90.7
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 6.1e-50 202.2 328 88.4
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 8.0e-50 201.8 318 90.9
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 8.0e-50 201.8 250 89.6
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 8.0e-50 201.8 318 90.6
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.0e-49 201.4 321 90.3
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.4e-49 201.1 318 90.3
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 2.3e-49 200.3 296 92.9
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 3.0e-49 199.9 330 77.0
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.0e-49 199.9 353 65.4
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.2e-49 199.1 320 89.7
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.2e-48 198.0 337 74.5
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.3e-47 194.5 250 86.0
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.2e-47 193.7 320 89.1
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 8.2e-47 191.8 310 89.4
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.1e-46 191.4 322 86.0
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.4e-46 191.0 340 72.9
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.3e-46 189.1 329 80.9
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.3e-46 189.1 329 80.9
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.0e-45 187.2 338 85.2
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.7e-45 186.8 319 87.5
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.5e-45 186.4 318 84.9
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 5.9e-45 185.7 250 69.6
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.3e-44 184.5 325 84.0
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.3e-44 184.5 325 84.0
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.2e-44 183.7 338 77.2
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.9e-43 180.6 327 86.5
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 9.4e-43 178.3 339 81.7
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.2e-42 177.9 317 85.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.2e-42 177.9 241 89.2
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.6e-42 177.6 319 86.5
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.1e-42 177.2 305 90.2
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 8.0e-42 175.3 318 85.2
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.0e-41 174.9 328 85.4
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.4e-41 174.5 323 85.8
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.4e-41 174.5 104 85.6
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.8e-41 174.1 345 73.6
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 4.0e-41 172.9 332 70.8
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.2e-41 172.6 312 85.9
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.8e-41 172.2 325 70.2
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.7e-40 169.1 101 85.1
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 5.7e-40 169.1 303 89.1
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 7.5e-40 168.7 96 84.4
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 7.5e-40 168.7 96 84.4
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.3e-39 167.9 312 83.0
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.2e-39 167.2 102 83.3
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.2e-39 167.2 250 84.8
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.2e-39 167.2 233 82.8
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 2.8e-39 166.8 320 53.1
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 6.3e-39 165.6 94 85.1
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 8.3e-39 165.2 101 83.2
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 3.1e-38 163.3 331 80.4
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 3.5e-37 159.8 100 78.0
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.5e-37 159.8 101 80.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.5e-37 159.8 101 80.2
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.0e-36 158.3 82 90.2
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.3e-36 157.1 86 86.0
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 3.8e-36 156.4 233 83.7
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.0e-32 144.1 253 77.9
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.4e-30 137.1 73 86.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 9.2e-30 135.2 85 69.4
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 3.8e-28 129.8 327 75.8
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 6.6e-28 129.0 304 79.6
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.3e-27 126.3 276 81.9
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 9.8e-24 115.2 71 77.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.0e-20 102.8 65 76.9
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 8.6e-20 102.1 73 69.9
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.8e-18 97.1 118 91.5
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 6.2e-18 95.9 50 84.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.3e-17 94.0 64 64.1
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.4e-16 89.7 64 62.5
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-14 84.7 258 85.7
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 5.4e-14 82.8 118 51.7
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.6e-13 81.3 252 69.8
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.1e-13 80.9 48 83.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 3.5e-13 80.1 63 63.5
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 6.6e-12 75.9 78 53.8
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 5.6e-11 72.8 41 82.9
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.8e-10 70.5 41 82.9
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.3e-09 67.4 41 80.5
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 4.0e-09 66.6 34 94.1
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 3.4e-08 63.5 34 88.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.4e-08 63.2 40 75.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 4.9e-07 59.7 32 87.5


User provided reference genes

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