Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G090600 Carya illinoinensis HOM05D002953 ORTHO05D003249 1.6e-142 509.6 303 100.0
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 3.4e-63 246.1 297 49.5
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 6.2e-57 225.3 298 50.7
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 5.3e-48 195.7 297 43.8
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 1.8e-43 180.6 314 38.9
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 6.2e-41 172.2 347 40.1
Haze_11930 Corylus avellana HOM05D002953 ORTHO05D003249 2.4e-40 170.2 296 43.6
Dinv16709 Davidia involucrata HOM05D002953 ORTHO05D003249 9.0e-40 168.3 208 48.1
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 9.9e-39 164.9 313 37.4
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 3.8e-38 162.9 311 38.9
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 4.9e-38 162.5 347 34.9
FvH4_4g30432 Fragaria vesca HOM05D002953 ORTHO05D003249 1.3e-35 154.5 314 35.7
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 3.9e-35 152.9 332 37.0
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 5.1e-35 152.5 324 36.7
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 8.7e-35 151.8 291 38.1
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 3.3e-34 149.8 329 37.7
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 1.3e-33 147.9 274 38.7
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 3.7e-33 146.4 320 38.4
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.8e-32 144.1 294 35.0
FAN12G1055 Fragaria x ananassa HOM05D002953 ORTHO05D003249 4.0e-32 142.9 326 34.0
TAR371G0440 Trochodendron aralioides HOM05D002953 ORTHO05D003249 9.0e-32 141.7 308 35.4
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 1.5e-31 141.0 346 36.7
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 4.5e-31 139.4 296 35.5
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.3e-30 137.9 317 33.1
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 4.2e-29 132.9 329 40.1
Hma1.2p1_0357F.1_g134470 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 7.1e-29 132.1 297 41.1
Prupe.1G282700 Prunus persica HOM05D002953 ORTHO05D003249 1.2e-28 131.3 303 44.2
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.6e-28 131.0 303 35.3
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 1.0e-27 128.3 321 38.0
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 2.3e-27 127.1 303 34.0
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 3.0e-27 126.7 330 33.9
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 3.0e-27 126.7 296 35.1
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 1.9e-26 124.0 304 34.5
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 3.3e-26 123.2 299 38.1
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 7.4e-26 122.1 299 35.8
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 1.3e-25 121.3 314 36.6
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 1.6e-25 120.9 312 35.6
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 3.7e-25 119.8 296 33.4
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 4.8e-25 119.4 294 33.0
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 6.3e-25 119.0 325 36.0
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 6.9e-24 115.5 291 32.3
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 2.0e-23 114.0 312 39.4
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 4.5e-23 112.8 328 31.1
RcHm_v2.0_Chr4g0438751 Rosa chinensis HOM05D002953 ORTHO05D003249 4.5e-23 112.8 332 35.8
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 1.3e-22 111.3 327 33.6
GSVIVG01012183001 Vitis vinifera HOM05D002953 ORTHO05D003249 2.2e-22 110.5 339 35.4
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 3.8e-22 109.8 302 32.8
Glyma.02G114300 Glycine max HOM05D002953 ORTHO05D003249 6.5e-22 109.0 279 32.6
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 4.2e-21 106.3 291 38.1
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 5.5e-21 105.9 297 32.3
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 7.2e-21 105.5 316 32.6
PSO017G2547 Papaver somniferum HOM05D002953 ORTHO05D003249 7.2e-21 105.5 320 37.8
Migut.L01214 Erythranthe guttata HOM05D002953 ORTHO05D003249 1.2e-20 104.8 299 38.1
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 2.1e-20 104.0 339 30.4
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 2.1e-20 104.0 328 35.1
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 2.1e-20 104.0 210 41.4
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 4.6e-20 102.8 307 35.5
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 7.9e-20 102.1 293 32.1
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 7.9e-20 102.1 333 30.3
Lalb_Chr16g0385611 Lupinus albus HOM05D002953 ORTHO05D003249 1.8e-19 100.9 323 39.0
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 2.3e-19 100.5 294 35.7
Eucgr.B03177 Eucalyptus grandis HOM05D002953 ORTHO05D003249 6.7e-19 99.0 302 32.5
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.5e-18 97.8 326 30.7
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 5.7e-18 95.9 336 29.2
AL1G25750 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 9.7e-18 95.1 317 35.0
Psat2g127880 Pisum sativum HOM05D002953 ORTHO05D003249 1.7e-17 94.4 217 36.4
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 2.2e-17 94.0 299 27.8
Carub.0001s1362 Capsella rubella HOM05D002953 ORTHO05D003249 3.7e-17 93.2 330 33.6
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.8e-17 92.8 294 32.7
Cc11_g12310 Coffea canephora HOM05D002953 ORTHO05D003249 1.1e-16 91.7 301 32.2
Peaxi162Scf00187g01311 Petunia axillaris HOM05D002953 ORTHO05D003249 1.4e-16 91.3 296 28.7
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 2.4e-16 90.5 303 29.0
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 4.1e-16 89.7 300 30.3
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 9.1e-16 88.6 322 27.6
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 9.1e-16 88.6 325 28.0
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 9.1e-16 88.6 322 27.6
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 2.0e-15 87.4 338 26.6
Gohir.D13G080100 Gossypium hirsutum HOM05D034412 ORTHO05D003249 2.0e-15 87.4 312 38.1
BcaB03g13124 Brassica carinata HOM05D002953 ORTHO05D003249 2.6e-15 87.0 321 29.3
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 2.6e-15 87.0 298 28.2
Gorai.013G091700 Gossypium raimondii HOM05D034412 ORTHO05D003249 2.6e-15 87.0 312 38.5
arahy.Tifrunner.gnm1.ann1.GA8N54 Arachis hypogaea HOM05D002953 ORTHO05D003249 4.5e-15 86.3 298 36.2
DCAR_007182 Daucus carota HOM05D002953 ORTHO05D003249 4.5e-15 86.3 330 34.8
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 4.5e-15 86.3 295 31.5
Sc11g0002310 Simmondsia chinensis HOM05D002953 ORTHO05D003249 4.5e-15 86.3 295 35.6
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 5.9e-15 85.9 295 31.5
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 7.7e-15 85.5 323 26.3
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.0e-14 85.1 328 29.6
arahy.Tifrunner.gnm1.ann1.FH6P3F Arachis hypogaea HOM05D002953 ORTHO05D003249 1.7e-14 84.3 299 36.8
ClCG05G023850 Citrullus lanatus HOM05D002953 ORTHO05D003249 2.2e-14 84.0 299 32.4
CsaV3_5G033170 Cucumis sativus L. HOM05D000954 ORTHO05D000822 2.9e-14 83.6 296 29.4
BraA06t24181Z Brassica rapa HOM05D002953 ORTHO05D003249 3.8e-14 83.2 303 33.0
Eucgr.B03175 Eucalyptus grandis HOM05D002953 ORTHO05D003249 3.8e-14 83.2 291 30.2
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 3.8e-14 83.2 295 31.2
C05p11700 Brassica napus HOM05D002953 ORTHO05D003249 6.5e-14 82.4 307 29.3
BolC5t29917H Brassica oleracea HOM05D002953 ORTHO05D003249 8.5e-14 82.0 307 29.3
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 8.5e-14 82.0 302 27.2
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 8.5e-14 82.0 292 28.1
HanXRQChr12g0375351 Helianthus annuus HOM05D002953 ORTHO05D003249 3.2e-13 80.1 305 32.1
SGA_v2.0_scaffold36G14435 Striga asiatica HOM05D002953 ORTHO05D003249 4.2e-13 79.7 303 34.0
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 7.2e-13 79.0 330 25.2
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 9.4e-13 78.6 209 29.2
Sed0002075 Sechium edule HOM05D002953 ORTHO05D003249 9.4e-13 78.6 315 28.6
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 2.1e-12 77.4 280 29.6
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 2.1e-12 77.4 295 26.1
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 3.6e-12 76.6 296 28.7
A06p09930 Brassica napus HOM05D002953 ORTHO05D003249 4.7e-12 76.3 303 32.7
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 6.1e-12 75.9 346 25.7
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 7.9e-12 75.5 273 28.6
SalBow2G1905 Salvia bowleyana HOM05D002953 ORTHO05D003249 7.9e-12 75.5 301 36.5
SalBow2G2783 Salvia bowleyana HOM05D002953 ORTHO05D003249 7.9e-12 75.5 301 36.5
Nitab4.5_0004304g0070 Nicotiana tabacum HOM05D000954 ORTHO05D000822 1.4e-11 74.7 297 30.3
TAR374G0889 Trochodendron aralioides HOM05D000954 ORTHO05D000822 1.4e-11 74.7 311 29.6
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.4e-11 74.7 271 29.9
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 3.0e-11 73.6 106 37.7
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 3.9e-11 73.2 115 44.3
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 5.1e-11 72.8 285 27.4
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 8.8e-11 72.0 321 25.2
Phvul.002G068600 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 8.8e-11 72.0 218 32.6
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 8.8e-11 72.0 109 37.6
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 8.8e-11 72.0 106 36.8
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 1.5e-10 71.2 283 26.9
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 1.5e-10 71.2 109 37.6
ATR0064G077 Amborella trichopoda HOM05D002953 ORTHO05D003249 2.0e-10 70.9 318 27.4
HPP92_017524 Vanilla planifolia HOM05D002953 ORTHO05D003249 2.6e-10 70.5 108 54.6
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 4.4e-10 69.7 107 37.4
Manes.01G029900 Manihot esculenta HOM05D002953 ORTHO05D003249 5.7e-10 69.3 301 33.6
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 5.7e-10 69.3 107 37.4
CDE10G0453 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 1.3e-09 68.2 331 26.0
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 1.3e-09 68.2 177 28.8
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 1.3e-09 68.2 279 27.2
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 1.3e-09 68.2 384 23.7
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 1.7e-09 67.8 213 33.3
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 1.7e-09 67.8 276 27.2
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 2.2e-09 67.4 107 37.4
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.2e-09 67.4 107 37.4
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 2.2e-09 67.4 107 38.3
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 2.8e-09 67.0 106 35.8
Duzib068G0795 Durio zibethinus HOM05D002953 ORTHO05D003249 3.7e-09 66.6 104 38.5
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 3.7e-09 66.6 287 25.8
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 4.8e-09 66.2 287 28.9
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 1.1e-08 65.1 284 27.1
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 1.1e-08 65.1 106 36.8
Zm00001eb400390 Zea mays HOM05D002953 ORTHO05D003249 1.1e-08 65.1 247 28.7
MELO3C012137.2 Cucumis melo HOM05D002953 ORTHO05D003249 1.4e-08 64.7 288 28.8
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 1.4e-08 64.7 107 32.7
Gohir.A13G080300 Gossypium hirsutum HOM05D034412 ORTHO05D003249 2.4e-08 63.9 309 35.6
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 3.1e-08 63.5 282 27.0
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 3.1e-08 63.5 293 26.6
Zm00001eb225120 Zea mays HOM05D002953 ORTHO05D003249 3.1e-08 63.5 112 35.7
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 4.1e-08 63.2 150 30.7
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 4.1e-08 63.2 269 26.0
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 5.3e-08 62.8 112 33.0
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 9.1e-08 62.0 106 34.9
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 9.1e-08 62.0 107 34.6
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 9.1e-08 62.0 107 34.6
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 1.5e-07 61.2 297 26.9
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 1.5e-07 61.2 219 27.4
AT1G13920 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 2.6e-07 60.5 233 29.2
Ah.02g126500 Amaranthus hybridus HOM05D002953 ORTHO05D003249 4.5e-07 59.7 374 23.8
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 4.5e-07 59.7 297 23.2
Lsat_1_v5_gn_4_12001 Lactuca sativa HOM05D002953 ORTHO05D003249 4.5e-07 59.7 298 24.8
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 5.9e-07 59.3 107 34.6
Lj2g0025232 Lotus japonicus HOM05D002953 ORTHO05D003249 5.9e-07 59.3 312 35.9
Os10g0325400 Oryza sativa ssp. japonica HOM05D002953 ORTHO05D003249 5.9e-07 59.3 335 32.2
Ca_04942_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 7.7e-07 58.9 191 37.2
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 7.7e-07 58.9 326 26.7
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 7.7e-07 58.9 112 32.1
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.0e-06 58.5 135 31.1
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 1.0e-06 58.5 160 27.5
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 1.3e-06 58.2 107 30.8
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 1.7e-06 57.8 306 23.9
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 1.7e-06 57.8 112 33.9
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 1.7e-06 57.8 283 26.9
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 1.7e-06 57.8 109 33.9
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 2.2e-06 57.4 298 22.8
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 2.2e-06 57.4 115 28.7
arahy.Tifrunner.gnm1.ann1.90GC30 Arachis hypogaea HOM05D002953 ORTHO05D003249 2.9e-06 57.0 292 25.3
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 5.0e-06 56.2 103 34.0
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 5.0e-06 56.2 103 34.0
AUR62007948 Chenopodium quinoa HOM05D002953 ORTHO05D003249 5.0e-06 56.2 344 25.0
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 8.5e-06 55.5 106 31.1
CDE05G2801 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 8.5e-06 55.5 94 46.8
Sc10g0009790 Simmondsia chinensis HOM05D002953 ORTHO05D003249 8.5e-06 55.5 107 32.7


User provided reference genes

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