Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G088700 Carya illinoinensis HOM05D009095 ORTHO05D005932 1.8e-103 379.4 208 100.0
Haze_11958 Corylus avellana HOM05D009095 ORTHO05D005932 1.3e-45 187.2 224 54.5
QL03p069741 Quercus lobata HOM05D009095 ORTHO05D005932 1.7e-37 160.2 214 55.1
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 7.1e-36 154.8 214 46.3
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 5.6e-33 145.2 222 45.0
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 5.4e-28 128.6 210 41.9
Thecc.02G339500 Theobroma cacao HOM05D009095 ORTHO05D005932 5.4e-28 128.6 213 41.8
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 5.1e-26 122.1 221 42.1
Duzib251G0477 Durio zibethinus HOM05D009095 ORTHO05D005932 1.2e-22 110.9 219 37.0
COL.COLO4_27972 Corchorus olitorius HOM05D009095 ORTHO05D005932 8.4e-21 104.8 219 37.0
arahy.Tifrunner.gnm1.ann1.3IH7MW Arachis hypogaea HOM05D013667 ORTHO05D005932 1.4e-20 104.0 204 35.8
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 1.9e-20 103.6 204 38.2
vmacro01343 Vaccinium macrocarpon HOM05D009095 ORTHO05D005932 4.2e-20 102.4 222 36.5
arahy.Tifrunner.gnm1.ann1.G7V7VG Arachis hypogaea HOM05D013667 ORTHO05D005932 1.6e-19 100.5 210 35.7
Phvul.002G169000 Phaseolus vulgaris HOM05D013667 ORTHO05D005932 1.1e-17 94.4 208 32.2
GSVIVG01019947001 Vitis vinifera HOM05D009095 ORTHO05D005932 1.1e-17 94.4 217 37.3
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 2.5e-17 93.2 200 37.0
Potri.017G079000 Populus trichocarpa HOM05D009095 ORTHO05D005932 3.3e-17 92.8 205 35.6
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 7.3e-17 91.7 187 37.4
TPR.G34048 Trifolium pratense HOM05D013667 ORTHO05D005932 2.1e-16 90.1 113 49.6
Medtr4g082330 Medicago truncatula HOM05D013667 ORTHO05D005932 3.6e-16 89.4 108 48.1
Sabra17G0070100 Salix brachista HOM05D009095 ORTHO05D005932 8.1e-16 88.2 220 34.1
Actinidia19933 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.1e-15 87.8 197 34.0
Ca_23884_v3 Cicer arietinum L. HOM05D013667 ORTHO05D005932 1.1e-15 87.8 110 49.1
QL03p069756 Quercus lobata HOM05D012615 ORTHO05D005932 2.4e-15 86.7 99 56.6
Ah.03g134680 Amaranthus hybridus HOM05D036760 ORTHO05D031035 5.3e-15 85.5 219 30.6
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 6.9e-15 85.1 188 36.2
Lalb_Chr09g0329161 Lupinus albus HOM05D013667 ORTHO05D005932 2.0e-14 83.6 95 48.4
CANSAT54G2635 Cannabis sativa HOM05D009095 ORTHO05D005932 3.4e-14 82.8 122 44.3
Migut.L01243 Erythranthe guttata HOM05D009095 ORTHO05D005932 1.3e-13 80.9 209 32.5
PGR102G2341 Punica granatum HOM05D009095 ORTHO05D005932 2.2e-13 80.1 222 32.9
Atru.chr11.1719 Acer truncatum HOM05D009095 ORTHO05D005932 1.1e-12 77.8 184 33.2
Peaxi162Scf00408g00521 Petunia axillaris HOM05D020902 ORTHO05D005932 2.4e-12 76.6 214 30.4
TAR622G0621 Trochodendron aralioides HOM05D034691 ORTHO05D005932 2.4e-12 76.6 189 33.9
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 3.2e-12 76.3 188 34.6
Cpa.g.c38098 Carica papaya HOM05D009095 ORTHO05D005932 3.2e-12 76.3 176 34.1
Nn4g23279 Nelumbo nucifera HOM05D034691 ORTHO05D005932 5.4e-12 75.5 193 34.7
Nn3g17332 Nelumbo nucifera HOM05D009095 ORTHO05D005932 7.1e-12 75.1 190 34.2
Psat7g135800 Pisum sativum HOM05D013667 ORTHO05D005932 9.3e-12 74.7 179 29.6
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 1.6e-11 73.9 169 34.9
Actinidia04866 Actinidia chinensis HOM05D008369 ORTHO05D005932 2.7e-11 73.2 166 43.4
Cc11_g12580 Coffea canephora HOM05D020902 ORTHO05D005932 7.9e-11 71.6 97 47.4
Gohir.A12G163200 Gossypium hirsutum HOM05D009095 ORTHO05D005932 1.3e-10 70.9 116 37.9
Lj4g0019858 Lotus japonicus HOM05D013667 ORTHO05D005932 1.8e-10 70.5 85 52.9
Gohir.D12G166200 Gossypium hirsutum HOM05D009095 ORTHO05D005932 3.0e-10 69.7 116 38.8
Gohir.A03G102500 Gossypium hirsutum HOM05D009095 ORTHO05D005932 3.9e-10 69.3 221 31.7
Eucgr.B03194 Eucalyptus grandis HOM05D066173 ORTHO05D005932 5.1e-10 68.9 108 41.7
Glyma.20G031200 Glycine max HOM05D013667 ORTHO05D005932 6.7e-10 68.6 212 31.1
MBI16_g25840_MAGBIO Magnolia biondii HOM05D036885 ORTHO05D034247 1.5e-09 67.4 194 28.4
Gorai.005G143000 Gossypium raimondii HOM05D009095 ORTHO05D005932 1.9e-09 67.0 221 30.8
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 3.3e-09 66.2 186 35.5
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 3.3e-09 66.2 178 34.8
Lsat_1_v5_gn_8_49101 Lactuca sativa HOM05D009095 ORTHO05D005932 4.3e-09 65.9 224 33.0
Gorai.008G179000 Gossypium raimondii HOM05D009095 ORTHO05D005932 7.4e-09 65.1 117 37.6
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 9.6e-09 64.7 170 36.5
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 1.3e-08 64.3 210 31.0
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 1.6e-08 63.9 196 32.1
VMungo0251G1037 Vigna mungo HOM05D013667 ORTHO05D005932 2.8e-08 63.2 184 30.4
ClCG09G021960 Citrullus lanatus HOM05D029799 ORTHO05D005932 6.2e-08 62.0 187 32.1
Eucgr.A00557 Eucalyptus grandis HOM05D066173 ORTHO05D005932 8.1e-08 61.6 108 40.7
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 8.1e-08 61.6 189 40.7
Oeu052457.1 Olea europaea HOM05D012087 ORTHO05D005932 1.4e-07 60.8 199 36.7
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.8e-07 60.5 205 30.7
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 2.4e-07 60.1 188 33.0
Peaxi162Scf00187g01112 Petunia axillaris HOM05D020902 ORTHO05D005932 3.1e-07 59.7 212 32.5
CSS0039450 Camellia sinensis var. sinensis HOM05D009095 ORTHO05D005932 4.0e-07 59.3 186 31.2
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 4.0e-07 59.3 190 38.4
Sopen03g034710 Solanum pennellii HOM05D012087 ORTHO05D005932 4.0e-07 59.3 226 27.9
AL5G13000 Arabidopsis lyrata HOM05D012098 ORTHO05D005932 5.3e-07 58.9 91 40.7
THA.LOC104805944 Tarenaya hassleriana HOM05D012098 ORTHO05D005932 5.3e-07 58.9 96 41.7
vmacro17570 Vaccinium macrocarpon HOM05D008369 ORTHO05D005932 9.0e-07 58.2 151 33.1
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 1.2e-06 57.8 181 34.3
HanXRQChr08g0210661 Helianthus annuus HOM05D009095 ORTHO05D005932 1.2e-06 57.8 98 41.8
Aqoxy3G03491 Aquilegia oxysepala HOM05D037250 ORTHO05D005932 1.5e-06 57.4 171 29.2
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 1.5e-06 57.4 105 42.9
Lsat_1_v5_gn_1_14361 Lactuca sativa HOM05D008369 ORTHO05D005932 1.5e-06 57.4 194 29.4
PGSC0003DMG400024562 Solanum tuberosum HOM05D012087 ORTHO05D005932 2.0e-06 57.0 234 29.5
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 2.6e-06 56.6 92 39.1
Sed0012343 Sechium edule HOM05D029799 ORTHO05D005932 2.6e-06 56.6 102 43.1
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 2.6e-06 56.6 178 31.5
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 3.4e-06 56.2 92 39.1
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 3.4e-06 56.2 188 34.0
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 4.5e-06 55.8 59 49.2
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 4.5e-06 55.8 60 51.7
AT2G03310 Arabidopsis thaliana HOM05D012098 ORTHO05D005932 5.8e-06 55.5 92 38.0
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 5.8e-06 55.5 190 36.3
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 7.6e-06 55.1 167 27.5


User provided reference genes

Program Settings