Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.0e-45 186.4 95 100.0
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.7e-30 133.7 95 73.7
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 2.1e-27 125.6 95 69.5
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 3.6e-27 124.8 95 69.5
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.1e-20 103.2 96 59.4
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 9.4e-20 100.1 95 56.8
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 9.4e-20 100.1 93 55.9
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.6e-19 99.4 93 55.9
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.6e-19 98.2 93 53.8
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 4.7e-19 97.8 95 54.7
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 6.1e-19 97.4 89 59.6
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 4.0e-18 94.7 88 60.2
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 4.0e-18 94.7 88 60.2
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 5.2e-18 94.4 94 52.1
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 6.8e-18 94.0 98 55.1
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.2e-17 93.2 87 59.8
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.5e-17 92.8 95 52.6
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 1.5e-17 92.8 95 51.6
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 9.8e-17 90.1 97 53.6
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 9.8e-17 90.1 86 51.2
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.3e-16 89.7 95 53.7
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.1e-15 86.7 96 53.1
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 1.4e-15 86.3 95 48.4
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 3.1e-15 85.1 95 48.4
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 4.1e-15 84.7 96 53.1
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 1.6e-14 82.8 97 54.6
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.6e-14 82.8 95 52.6
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.7e-14 82.0 95 51.6
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 5.9e-14 80.9 90 51.1
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.7e-14 80.5 88 52.3
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.3e-13 79.7 94 48.9
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.7e-13 79.3 95 49.5
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.7e-13 79.3 95 49.5
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 1.7e-13 79.3 96 52.1
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 2.3e-13 79.0 108 46.3
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 2.3e-13 79.0 96 45.8
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 3.8e-13 78.2 94 51.1
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 3.8e-13 78.2 94 46.8
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.0e-13 77.8 97 50.5
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 5.0e-13 77.8 104 46.2
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.5e-13 77.4 95 48.4
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.5e-13 77.4 97 50.5
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 6.5e-13 77.4 96 45.8
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 8.6e-13 77.0 87 43.7
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.1e-12 76.6 92 50.0
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.1e-12 76.6 96 49.0
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.5e-12 76.3 97 49.5
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 2.5e-12 75.5 89 47.2
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.5e-12 75.5 88 48.9
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 4.2e-12 74.7 85 50.6
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 9.5e-12 73.6 90 45.6
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.2e-11 73.2 89 44.9
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.6e-11 72.8 89 44.9
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 2.1e-11 72.4 94 43.6
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 2.8e-11 72.0 85 48.2
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 2.8e-11 72.0 96 47.9
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 3.6e-11 71.6 95 45.3
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 6.1e-11 70.9 98 45.9
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 6.1e-11 70.9 97 48.5
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 8.0e-11 70.5 96 44.8
Phvul.002G085300 Phaseolus vulgaris HOM05D015099 ORTHO05D008288 8.0e-11 70.5 110 42.7
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.0e-10 70.1 97 48.5
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 1.4e-10 69.7 98 45.9
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 1.4e-10 69.7 95 49.5
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.8e-10 69.3 95 46.3
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 1.8e-10 69.3 89 49.4
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 2.3e-10 68.9 92 48.9
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.0e-10 68.6 96 43.8
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 3.0e-10 68.6 95 43.2
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 4.0e-10 68.2 95 45.3
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.0e-10 68.2 96 43.8
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 6.8e-10 67.4 88 47.7
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 6.8e-10 67.4 78 47.4
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 4.4e-09 64.7 96 39.6
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 4.4e-09 64.7 93 39.8
VMungo1215G2026 Vigna mungo HOM05D015099 ORTHO05D008288 4.4e-09 64.7 110 40.9
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 5.7e-09 64.3 87 41.4
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 7.5e-09 63.9 89 44.9
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.7e-08 62.8 90 43.3
Glyma.01G047800 Glycine max HOM05D015099 ORTHO05D008288 1.7e-08 62.8 108 41.7
Carub.0002s1626 Capsella rubella HOM05D009494 ORTHO05D011604 2.8e-08 62.0 111 36.0
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 2.8e-08 62.0 95 44.2
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 3.7e-08 61.6 99 39.4
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 6.3e-08 60.8 93 43.0
BcaC03g15096 Brassica carinata HOM05D009494 ORTHO05D011604 8.3e-08 60.5 111 36.0
C02p26570 Brassica napus HOM05D009494 ORTHO05D011604 8.3e-08 60.5 111 36.0
BolC2t08728H Brassica oleracea HOM05D009494 ORTHO05D011604 8.3e-08 60.5 111 36.0
BraA07t30782Z Brassica rapa HOM05D009494 ORTHO05D011604 8.3e-08 60.5 75 41.3
CARHR062540 Cardamine hirsuta HOM05D009494 ORTHO05D011604 8.3e-08 60.5 105 35.2
A07p31500 Brassica napus HOM05D009494 ORTHO05D011604 1.1e-07 60.1 105 35.2
C06p36810 Brassica napus HOM05D009494 ORTHO05D011604 1.1e-07 60.1 75 40.0
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 1.4e-07 59.7 74 52.7
BcaC08g45881 Brassica carinata HOM05D009494 ORTHO05D011604 1.8e-07 59.3 75 40.0
BolC6t38790H Brassica oleracea HOM05D009494 ORTHO05D011604 1.8e-07 59.3 75 40.0
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.4e-07 58.9 76 43.4
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 2.4e-07 58.9 89 40.4
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 3.1e-07 58.5 91 41.8
AT1G69588 Arabidopsis thaliana HOM05D009494 ORTHO05D011604 5.4e-07 57.8 109 35.8
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 5.4e-07 57.8 85 40.0
Lj2g0016871 Lotus japonicus HOM05D015099 ORTHO05D008288 7.0e-07 57.4 75 44.0
Thhalv10019320m.g Eutrema salsugineum HOM05D009494 ORTHO05D011604 9.2e-07 57.0 112 37.5
BcaB03g15485 Brassica carinata HOM05D009494 ORTHO05D011604 1.2e-06 56.6 75 40.0
Migut.E00089 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.2e-06 56.6 99 39.4
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 1.2e-06 56.6 112 37.5
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.6e-06 56.2 96 39.6
Aa31LG4G11160 Aethionema arabicum HOM05D009494 ORTHO05D011604 2.0e-06 55.8 112 34.8
Sp5g24710 Schrenkiella parvula HOM05D009494 ORTHO05D011604 2.0e-06 55.8 111 33.3
BcaB05g24463 Brassica carinata HOM05D009494 ORTHO05D011604 4.5e-06 54.7 75 40.0
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.5e-06 54.7 91 39.6
BraA02t06659Z Brassica rapa HOM05D009494 ORTHO05D011604 5.9e-06 54.3 105 36.2
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 5.9e-06 54.3 91 42.9
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 5.9e-06 54.3 85 37.6
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.8e-06 53.9 91 38.5


User provided reference genes

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