Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 2.1e-109 399.1 203 100.0
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 8.6e-95 350.5 201 86.1
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 5.7e-91 337.8 201 82.1
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 6.3e-90 334.3 201 81.6
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 8.3e-90 334.0 203 82.8
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 3.2e-89 332.0 203 81.8
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 7.0e-89 330.9 198 80.3
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.2e-88 330.1 199 81.9
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.2e-88 330.1 198 80.3
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 2.7e-88 328.9 198 81.3
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 3.5e-88 328.6 198 79.8
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 4.6e-88 328.2 200 81.0
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 4.6e-88 328.2 203 80.3
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 4.6e-88 328.2 203 79.8
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.3e-87 326.6 203 79.3
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 5.0e-87 324.7 199 81.9
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 2.5e-86 322.4 201 78.6
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 9.5e-86 320.5 203 79.3
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 9.5e-86 320.5 201 78.1
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.2e-85 320.1 200 79.5
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 1.2e-85 320.1 203 79.3
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.2e-85 320.1 203 78.3
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.2e-85 320.1 201 78.6
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.1e-85 319.3 201 80.6
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 1.0e-84 317.0 200 77.5
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.4e-84 316.6 201 77.6
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.8e-84 316.2 200 79.0
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.1e-84 315.5 201 79.6
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 4.0e-84 315.1 198 77.3
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 5.2e-84 314.7 201 77.1
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.6e-83 312.4 200 78.0
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.6e-83 312.4 200 78.0
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.6e-83 312.4 200 77.5
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 4.4e-83 311.6 201 77.1
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 5.8e-83 311.2 198 78.3
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.3e-82 310.1 200 74.0
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 2.9e-82 308.9 203 76.8
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 6.4e-82 307.8 203 74.4
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.9e-81 306.2 200 76.5
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 3.2e-81 305.4 198 76.8
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 5.4e-81 304.7 198 75.8
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 5.4e-81 304.7 201 76.1
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.6e-80 303.1 199 76.9
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.0e-80 302.8 200 75.5
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 2.0e-80 302.8 201 75.1
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 2.7e-80 302.4 201 77.1
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.5e-80 302.0 203 73.9
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 4.6e-80 301.6 201 73.1
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 7.8e-80 300.8 201 73.1
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.0e-79 300.4 200 76.0
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 2.3e-79 299.3 203 74.9
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 2.3e-79 299.3 201 74.1
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 5.0e-79 298.1 198 75.8
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.0e-79 298.1 200 75.5
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 6.6e-79 297.7 189 78.3
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-78 297.0 196 74.0
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.1e-78 297.0 196 74.0
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.1e-78 297.0 203 72.4
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.5e-78 296.6 203 71.4
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.5e-78 296.6 203 74.9
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-78 296.6 200 74.0
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.9e-78 296.2 195 73.3
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 3.3e-78 295.4 203 70.4
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 3.3e-78 295.4 203 70.4
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 4.3e-78 295.0 198 73.7
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 4.3e-78 295.0 198 75.8
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 5.6e-78 294.7 196 73.5
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 5.6e-78 294.7 203 71.4
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 7.3e-78 294.3 201 69.2
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 7.3e-78 294.3 203 70.4
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 7.3e-78 294.3 203 70.4
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 9.5e-78 293.9 196 73.0
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 1.2e-77 293.5 203 70.9
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.2e-77 293.5 210 70.5
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-77 293.5 203 70.0
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.2e-77 293.5 201 71.6
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.2e-77 293.5 201 75.1
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 2.1e-77 292.7 198 73.7
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 3.6e-77 292.0 203 69.5
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.7e-77 291.6 182 78.0
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.8e-76 289.7 200 71.0
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.3e-76 289.3 181 77.3
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 2.3e-76 289.3 200 70.5
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 3.1e-76 288.9 201 73.1
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.2e-75 287.0 198 73.2
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.2e-75 287.0 204 74.0
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.2e-75 287.0 206 68.9
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 2.0e-75 286.2 197 72.1
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.0e-75 286.2 201 72.6
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 4.4e-75 285.0 197 71.6
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 7.5e-75 284.3 201 70.6
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 6.4e-74 281.2 198 69.7
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.9e-73 279.6 200 69.0
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 3.2e-73 278.9 200 69.0
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 7.1e-73 277.7 200 70.5
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 1.2e-72 276.9 200 70.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 2.1e-72 276.2 200 70.0
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 2.7e-72 275.8 201 70.6
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 4.6e-72 275.0 198 68.7
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 6.0e-72 274.6 198 68.2
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 7.8e-72 274.2 203 67.5
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 1.0e-71 273.9 329 49.8
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 6.6e-71 271.2 178 73.6
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 67.2
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 2.5e-70 269.2 194 69.1
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.6e-69 266.5 199 68.3
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.1e-69 266.2 184 71.7
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 3.6e-69 265.4 205 68.8
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.8e-68 263.1 199 68.8
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.3e-68 262.7 178 70.8
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 5.2e-68 261.5 198 66.7
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 5.8e-67 258.1 175 74.9
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 4.9e-66 255.0 189 70.9
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 6.4e-66 254.6 185 63.8
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 5.4e-65 251.5 220 61.4
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 3.5e-64 248.8 181 69.1
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 3.5e-64 248.8 198 59.1
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.9e-62 243.0 221 57.0
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 9.9e-59 230.7 240 55.4
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.9e-58 229.2 251 53.4
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.6e-56 223.4 235 55.7
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 2.1e-56 223.0 167 69.5
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 6.2e-53 211.5 199 52.8
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.2e-48 197.2 225 51.6
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.6e-48 196.8 190 52.1
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 3.6e-45 185.7 128 71.9
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 4.0e-44 182.2 120 74.2
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 1.5e-43 180.3 112 80.4
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 2.6e-43 179.5 194 51.0
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 4.2e-41 172.2 115 74.8
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 9.3e-41 171.0 112 75.0
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 1.2e-40 170.6 201 45.8
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 3.9e-39 165.6 112 73.2
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 7.4e-38 161.4 176 47.2
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 3.2e-33 146.0 166 48.8
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 6.7e-31 138.3 208 39.9
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-30 137.5 103 66.0
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.5e-30 137.1 94 68.1
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 2.8e-29 132.9 87 72.4
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 3.1e-28 129.4 85 74.1
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 6.9e-28 128.3 210 41.0
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.5e-27 127.1 129 55.0
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.5e-27 127.1 81 77.8
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.0e-27 126.7 81 76.5
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.6e-27 126.3 84 70.2
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.4e-25 120.6 130 50.0
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 3.5e-24 115.9 101 62.4
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.1e-22 110.9 73 76.7
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-21 107.5 77 67.5
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.8e-21 106.3 68 73.5
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.0e-19 100.1 72 66.7
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 5.9e-19 98.6 102 50.0
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 5.9e-19 98.6 198 33.3
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 3.8e-18 95.9 70 62.9
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.2e-17 91.7 118 46.6
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 7.2e-17 91.7 75 60.0
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 7.9e-16 88.2 197 31.5
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 9.7e-14 81.3 105 45.7
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 2.4e-12 76.6 49 69.4
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.6e-11 73.2 45 75.6
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 2.5e-09 66.6 42 71.4
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 4.2e-09 65.9 77 53.2
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 5.5e-09 65.5 46 63.0
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 7.9e-08 61.6 70 42.9
RcHm_v2.0_Chr1g0352451 Rosa chinensis HOM05D004366 ORTHO05D005058 7.9e-08 61.6 36 75.0
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 3.0e-07 59.7 42 66.7
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 1.1e-06 57.8 40 62.5
TAR626G1697 Trochodendron aralioides HOM05D049658 ORTHO05D051498 2.6e-06 56.6 38 68.4


User provided reference genes

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