Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.1e-40 169.5 83 100.0
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.1e-40 169.5 83 100.0
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 9.4e-40 166.4 83 98.8
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.6e-39 164.5 83 97.6
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.1e-24 116.3 84 72.6
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 3.2e-24 114.8 82 67.1
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 3.3e-21 104.8 91 67.0
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 5.7e-21 104.0 84 64.3
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 7.5e-21 103.6 82 65.9
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.2e-20 102.1 85 64.7
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.2e-20 102.1 85 64.7
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.2e-20 102.1 83 66.3
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 3.7e-20 101.3 89 60.7
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 3.7e-20 101.3 82 65.9
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.4e-19 99.4 85 64.7
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 1.8e-19 99.0 84 64.3
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.8e-19 99.0 85 64.7
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 4.1e-19 97.8 86 64.0
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 5.3e-19 97.4 80 65.0
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 7.0e-19 97.1 84 65.5
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 9.1e-19 96.7 84 60.7
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 9.1e-19 96.7 82 62.2
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 9.1e-19 96.7 82 62.2
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 9.1e-19 96.7 82 62.2
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 9.1e-19 96.7 77 66.2
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 9.1e-19 96.7 85 61.2
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.0e-18 95.5 73 64.4
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.5e-18 94.4 85 61.2
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.9e-18 94.0 85 60.0
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.0e-17 93.2 70 68.6
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.0e-17 93.2 85 60.0
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.3e-17 92.8 86 61.6
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 1.3e-17 92.8 86 62.8
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.3e-17 92.8 84 64.3
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.3e-17 92.8 77 63.6
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.7e-17 92.4 85 63.5
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 2.2e-17 92.0 79 58.2
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 2.2e-17 92.0 82 59.8
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.8e-17 91.3 85 60.0
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 3.8e-17 91.3 81 59.3
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 6.5e-17 90.5 73 60.3
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 8.5e-17 90.1 83 60.2
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 8.5e-17 90.1 82 58.5
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 2.5e-16 88.6 84 61.9
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.2e-16 88.2 85 57.6
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 3.2e-16 88.2 80 60.0
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.2e-16 87.8 85 57.6
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 4.2e-16 87.8 84 59.5
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 7.2e-16 87.0 82 56.1
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 7.2e-16 87.0 78 62.8
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 9.4e-16 86.7 75 60.0
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.2e-15 86.3 79 62.0
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.2e-15 86.3 92 57.6
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 1.2e-15 86.3 94 55.3
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.2e-15 86.3 79 54.4
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 2.1e-15 85.5 85 56.5
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 2.1e-15 85.5 86 55.8
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 2.7e-15 85.1 84 56.0
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 3.6e-15 84.7 84 57.1
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.0e-14 83.2 83 55.4
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.0e-14 81.3 78 61.5
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 8.8e-14 80.1 79 58.2
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 8.8e-14 80.1 81 56.8
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.2e-13 79.7 88 51.1
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 2.0e-13 79.0 76 57.9
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.0e-13 79.0 91 52.7
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 2.0e-13 79.0 81 56.8
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 2.6e-13 78.6 76 57.9
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.6e-13 78.6 79 53.2
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.6e-13 78.6 83 54.2
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.4e-13 78.2 84 54.8
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.4e-13 78.2 85 56.5
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 5.7e-13 77.4 75 56.0
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 5.7e-13 77.4 83 54.2
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.7e-13 77.4 94 52.1
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 7.5e-13 77.0 95 54.7
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 1.3e-12 76.3 89 52.8
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.3e-12 76.3 72 56.9
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 1.7e-12 75.9 91 56.0
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.2e-12 75.5 77 55.8
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 2.8e-12 75.1 79 51.9
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.8e-12 75.1 91 51.6
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.7e-12 74.7 86 48.8
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 3.7e-12 74.7 83 54.2
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.7e-12 74.7 71 57.7
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 4.8e-12 74.3 82 58.5
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.8e-12 74.3 92 51.1
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 4.8e-12 74.3 84 52.4
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 4.8e-12 74.3 84 52.4
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 4.8e-12 74.3 80 53.8
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 8.3e-12 73.6 73 56.2
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.1e-11 73.2 79 49.4
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.4e-11 72.8 79 48.1
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.4e-11 72.8 80 52.5
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.8e-11 72.4 89 50.6
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.4e-11 72.0 84 50.0
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 2.4e-11 72.0 87 49.4
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.4e-11 72.0 82 52.4
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.4e-11 72.0 76 57.9
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 3.1e-11 71.6 79 54.4
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 3.1e-11 71.6 76 53.9
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 4.1e-11 71.2 87 48.3
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 4.1e-11 71.2 72 51.4
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 5.4e-11 70.9 82 48.8
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 7.0e-11 70.5 79 51.9
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 9.1e-11 70.1 84 51.2
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 9.1e-11 70.1 83 55.4
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 9.1e-11 70.1 89 51.7
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 9.1e-11 70.1 83 49.4
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.2e-10 69.7 89 46.1
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.2e-10 69.7 76 51.3
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.6e-10 69.3 82 48.8
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 2.0e-10 68.9 73 56.2
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.7e-10 68.6 74 47.3
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 2.7e-10 68.6 76 50.0
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 2.7e-10 68.6 76 50.0
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 3.5e-10 68.2 73 49.3
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 3.5e-10 68.2 91 44.0
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 4.5e-10 67.8 77 54.5
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 4.5e-10 67.8 87 44.8
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 4.5e-10 67.8 75 53.3
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 4.5e-10 67.8 75 53.3
Haze_12125 Corylus avellana HOM05D003533 ORTHO05D004009 5.9e-10 67.4 82 53.7
Prupe.1G261200 Prunus persica HOM05D003533 ORTHO05D004009 5.9e-10 67.4 87 54.0
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.9e-10 67.4 76 52.6
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 1.0e-09 66.6 83 49.4
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.3e-09 66.2 76 51.3
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 1.3e-09 66.2 76 50.0
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.7e-09 65.9 83 47.0
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.7e-09 65.9 76 51.3
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 2.2e-09 65.5 90 43.3
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 2.2e-09 65.5 90 43.3
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.2e-09 65.5 93 44.1
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 2.2e-09 65.5 84 42.9
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.9e-09 65.1 84 51.2
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 2.9e-09 65.1 82 48.8
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 3.8e-09 64.7 76 50.0
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 3.8e-09 64.7 76 50.0
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 5.0e-09 64.3 80 46.2
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 8.5e-09 63.5 76 48.7
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.1e-08 63.2 84 46.4
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.9e-08 62.4 85 48.2
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.9e-08 62.4 82 52.4
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 3.2e-08 61.6 69 49.3
A01p25480 Brassica napus HOM05D013399 ORTHO05D019752 3.2e-08 61.6 82 43.9
BraA01t02465Z Brassica rapa HOM05D013399 ORTHO05D019752 3.2e-08 61.6 82 43.9
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 3.2e-08 61.6 79 48.1
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 3.2e-08 61.6 60 55.0
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 4.2e-08 61.2 84 46.4
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 4.2e-08 61.2 84 44.0
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 5.5e-08 60.8 84 46.4
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 7.2e-08 60.5 79 43.0
HanXRQChr04g0107311 Helianthus annuus HOM05D003533 ORTHO05D004009 1.2e-07 59.7 77 44.2
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.6e-07 59.3 63 52.4
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 3.6e-07 58.2 71 45.1
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 6.1e-07 57.4 60 51.7
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 6.1e-07 57.4 63 52.4
BcaC01g02313 Brassica carinata HOM05D013399 ORTHO05D004009 8.0e-07 57.0 76 43.4
C01p31910 Brassica napus HOM05D013399 ORTHO05D019752 8.0e-07 57.0 82 41.5
BolC1t03165H Brassica oleracea HOM05D013399 ORTHO05D019752 8.0e-07 57.0 82 41.5
BolC3t18939H Brassica oleracea HOM05D013399 ORTHO05D004009 8.0e-07 57.0 76 43.4
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 8.0e-07 57.0 84 45.2
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 8.0e-07 57.0 84 45.2
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.4e-06 56.2 54 59.3
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.4e-06 56.2 86 41.9
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 1.8e-06 55.8 89 40.4
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 1.8e-06 55.8 89 40.4
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 1.8e-06 55.8 89 40.4
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 1.8e-06 55.8 89 40.4
BraA06t25683Z Brassica rapa HOM05D013399 ORTHO05D004009 2.3e-06 55.5 76 43.4
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 2.3e-06 55.5 88 40.9
DCAR_024519 Daucus carota HOM05D013802 ORTHO05D012832 2.3e-06 55.5 76 43.4
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 3.0e-06 55.1 60 50.0
Cc11_g14100 Coffea canephora HOM05D013802 ORTHO05D012832 4.0e-06 54.7 66 47.0
Lsat_1_v5_gn_1_11180 Lactuca sativa HOM05D003533 ORTHO05D004009 4.0e-06 54.7 77 44.2
ClCG06G016690 Citrullus lanatus HOM05D003533 ORTHO05D004009 5.2e-06 54.3 70 48.6
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 5.2e-06 54.3 77 42.9
QL03p067192 Quercus lobata HOM05D003533 ORTHO05D337925 6.8e-06 53.9 82 45.1
A06p27440 Brassica napus HOM05D013399 ORTHO05D004009 8.8e-06 53.5 76 42.1


User provided reference genes

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