Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.7e-42 175.6 92 100.0
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 1.9e-25 119.0 91 75.8
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 4.7e-24 114.4 84 77.4
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.0e-23 113.2 86 77.9
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 2.0e-22 109.0 89 71.9
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 1.3e-21 106.3 89 74.2
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 1.1e-20 103.2 92 65.2
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 1.5e-17 92.8 72 69.4
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 1.9e-17 92.4 90 61.1
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 4.2e-17 91.3 94 61.7
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 7.2e-17 90.5 93 55.9
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 1.6e-16 89.4 93 55.9
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 1.6e-16 89.4 88 60.2
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 4.7e-16 87.8 93 59.1
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 8.0e-16 87.0 88 59.1
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 2.3e-15 85.5 69 63.8
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 3.0e-15 85.1 100 54.0
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 6.8e-15 84.0 76 61.8
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 8.8e-15 83.6 87 57.5
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 1.2e-14 83.2 97 52.6
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 1.5e-14 82.8 76 55.3
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 2.0e-14 82.4 95 52.6
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 2.0e-14 82.4 76 57.9
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 2.6e-14 82.0 63 66.7
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 3.4e-14 81.6 107 47.7
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 3.4e-14 81.6 95 56.8
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 4.4e-14 81.3 50 80.0
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 4.4e-14 81.3 84 54.8
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 4.4e-14 81.3 82 57.3
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 9.8e-14 80.1 65 66.2
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 9.8e-14 80.1 79 57.0
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 1.3e-13 79.7 95 51.6
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 1.3e-13 79.7 92 51.1
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 1.3e-13 79.7 99 48.5
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.7e-13 79.3 96 50.0
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.7e-13 79.3 96 50.0
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 1.7e-13 79.3 96 50.0
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 2.8e-13 78.6 71 60.6
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 2.8e-13 78.6 71 60.6
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 2.8e-13 78.6 71 60.6
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 2.8e-13 78.6 71 60.6
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 2.8e-13 78.6 71 60.6
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 2.8e-13 78.6 65 66.2
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 2.8e-13 78.6 68 63.2
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 3.7e-13 78.2 69 59.4
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 3.7e-13 78.2 77 58.4
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 6.3e-13 77.4 92 53.3
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 6.3e-13 77.4 82 57.3
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 6.3e-13 77.4 74 62.2
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 1.4e-12 76.3 69 59.4
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 2.4e-12 75.5 76 56.6
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 3.1e-12 75.1 69 62.3
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 7.0e-12 73.9 77 57.1
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 9.2e-12 73.6 78 55.1
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 9.2e-12 73.6 59 66.1
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 1.2e-11 73.2 76 51.3
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 1.2e-11 73.2 71 59.2
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 1.2e-11 73.2 92 48.9
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 2.0e-11 72.4 82 54.9
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 3.5e-11 71.6 65 63.1
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 3.5e-11 71.6 84 50.0
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 4.5e-11 71.2 92 51.1
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 4.5e-11 71.2 81 51.9
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 4.5e-11 71.2 64 59.4
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 4.5e-11 71.2 81 51.9
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 5.9e-11 70.9 77 55.8
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 5.9e-11 70.9 77 55.8
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 7.8e-11 70.5 86 54.7
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 7.8e-11 70.5 80 52.5
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 1.0e-10 70.1 70 62.9
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 1.3e-10 69.7 75 52.0
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 1.7e-10 69.3 67 56.7
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 1.7e-10 69.3 63 57.1
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 1.7e-10 69.3 67 56.7
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 1.7e-10 69.3 67 59.7
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 2.3e-10 68.9 73 56.2
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 3.8e-10 68.2 64 57.8
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 3.8e-10 68.2 64 57.8
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 5.0e-10 67.8 63 55.6
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 5.0e-10 67.8 67 55.2
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 6.6e-10 67.4 44 79.5
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 6.6e-10 67.4 69 58.0
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 8.6e-10 67.0 63 58.7
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 1.1e-09 66.6 75 53.3
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.5e-09 66.2 65 53.8
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 1.5e-09 66.2 61 59.0
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 1.9e-09 65.9 83 51.8
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 2.5e-09 65.5 45 71.1
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.5e-09 65.5 69 56.5
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.2e-08 63.2 59 61.0
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.6e-08 62.8 54 55.6
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 1.6e-08 62.8 91 49.5
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 4.7e-08 61.2 94 46.8
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 6.1e-08 60.8 51 68.6
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 6.1e-08 60.8 51 68.6
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 6.1e-08 60.8 77 50.6
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 6.1e-08 60.8 77 50.6
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 8.0e-08 60.5 78 50.0
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 8.0e-08 60.5 78 50.0
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 1.0e-07 60.1 83 45.8
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.0e-07 60.1 73 53.4
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.4e-07 59.7 78 50.0
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 1.4e-07 59.7 65 53.8
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.8e-07 59.3 67 53.7
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 1.8e-07 59.3 75 52.0
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 2.3e-07 58.9 73 50.7
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 3.0e-07 58.5 68 48.5
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 4.0e-07 58.2 94 44.7
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 5.2e-07 57.8 64 48.4
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 6.8e-07 57.4 75 56.0
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 8.9e-07 57.0 72 50.0
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 8.9e-07 57.0 44 63.6
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 8.9e-07 57.0 43 65.1
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.2e-06 56.6 58 53.4
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 1.2e-06 56.6 43 65.1
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 1.2e-06 56.6 55 50.9
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 1.5e-06 56.2 74 55.4
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 2.0e-06 55.8 27 88.9
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 2.0e-06 55.8 41 63.4
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 2.0e-06 55.8 84 45.2
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 2.6e-06 55.5 42 66.7
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 2.6e-06 55.5 43 60.5
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 3.4e-06 55.1 70 47.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 5.7e-06 54.3 67 49.3
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 5.7e-06 54.3 53 56.6
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 5.7e-06 54.3 48 60.4
HanXRQChr03g0080371 Helianthus annuus HOM05D007247 ORTHO05D009208 5.7e-06 54.3 33 72.7
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 7.5e-06 53.9 39 64.1
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 7.5e-06 53.9 52 57.7
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 7.5e-06 53.9 52 57.7
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 7.5e-06 53.9 59 50.8
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 7.5e-06 53.9 71 46.5
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 9.8e-06 53.5 33 72.7
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 9.8e-06 53.5 33 72.7
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 9.8e-06 53.5 33 72.7
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 9.8e-06 53.5 39 66.7


User provided reference genes

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