Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 0.0e+00 1171.4 609 100.0
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 4.0e-220 768.5 618 68.4
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.0e-196 690.6 622 62.1
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 8.1e-157 558.1 652 53.1
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 8.4e-146 521.5 640 50.2
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.1e-145 521.2 660 48.8
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 6.0e-144 515.4 670 47.8
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 3.1e-140 503.1 643 48.5
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.0e-139 500.4 669 47.2
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 3.4e-139 499.6 610 50.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.3e-138 497.7 623 50.4
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.7e-138 497.3 707 46.8
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.8e-135 487.3 663 47.4
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 9.6e-134 481.5 640 47.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.8e-132 477.2 638 48.3
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.0e-132 474.9 681 45.2
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.5e-131 474.2 644 48.0
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.0e-130 471.5 686 45.0
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.9e-130 469.9 673 45.8
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.3e-127 461.1 684 44.4
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.9e-127 459.5 652 47.1
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 5.1e-127 459.1 650 46.9
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 6.7e-127 458.8 695 44.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 2.5e-126 456.8 684 44.2
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.1e-124 451.4 709 44.3
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.1e-121 441.4 638 45.1
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.2e-121 439.9 625 46.1
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.2e-120 438.0 665 44.8
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.6e-120 437.6 644 44.7
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.7e-120 436.8 642 44.4
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.7e-120 436.8 677 43.1
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.6e-120 436.4 680 43.2
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 5.1e-119 432.6 646 45.0
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 7.4e-118 428.7 715 41.4
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.3e-117 425.6 686 41.5
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 7.7e-115 418.7 632 43.8
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.7e-114 417.5 670 43.1
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.2e-114 417.2 604 43.7
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.7e-112 409.5 669 41.9
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.5e-110 404.4 667 41.8
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 9.7e-110 401.7 659 43.6
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 6.3e-109 399.1 668 41.5
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 5.3e-108 396.0 689 41.7
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 7.7e-107 392.1 673 41.8
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.7e-106 391.0 662 39.7
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.1e-104 384.0 578 44.1
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 2.7e-104 383.6 684 39.6
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 6.1e-104 382.5 722 38.6
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 8.8e-103 378.6 684 39.8
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.4e-100 371.3 638 40.8
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 2.0e-99 367.5 695 38.8
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.0e-98 365.2 707 38.8
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.3e-98 364.8 639 40.1
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.5e-98 362.1 639 39.4
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 8.5e-98 362.1 679 40.2
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 6.1e-96 355.9 656 39.5
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 8.0e-96 355.5 655 40.3
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.5e-94 351.3 747 37.2
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.8e-94 348.6 707 36.1
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 3.7e-93 346.7 705 37.3
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.1e-92 345.1 704 36.9
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 2.4e-92 344.0 720 36.8
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.0e-90 338.6 644 38.8
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.5e-89 334.0 634 38.6
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 9.5e-89 332.0 668 37.4
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.2e-88 331.6 809 33.6
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 4.7e-88 329.7 638 37.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.4e-86 323.2 639 36.8
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 2.8e-85 320.5 635 38.0
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 2.8e-85 320.5 635 38.0
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.8e-84 317.8 623 38.0
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.7e-82 311.2 735 34.4
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 8.6e-82 308.9 694 34.9
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 4.3e-81 306.6 636 37.6
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 4.3e-81 306.6 636 37.6
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.1e-80 304.3 624 36.7
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 6.1e-80 302.8 627 37.0
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 6.1e-80 302.8 436 46.1
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.4e-79 301.6 715 33.1
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.8e-79 301.2 665 36.7
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 4.0e-79 300.1 622 34.9
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 5.7e-78 296.2 619 35.5
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.7e-78 296.2 762 32.4
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 9.8e-78 295.4 657 36.2
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 9.2e-76 288.9 625 36.5
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 9.2e-76 288.9 532 38.3
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 4.6e-75 286.6 628 35.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 7.8e-75 285.8 586 38.1
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.0e-74 285.4 627 35.9
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 5.0e-74 283.1 645 34.7
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-74 283.1 660 35.8
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.9e-73 281.2 623 35.3
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.5e-73 280.8 705 33.5
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 6.8e-71 272.7 649 34.7
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.2e-70 271.9 710 33.2
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.2e-70 271.9 495 40.2
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.2e-70 271.9 850 29.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.0e-70 271.2 617 33.7
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 4.9e-69 266.5 852 29.7
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.1e-68 265.4 608 35.4
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.2e-67 261.9 618 35.4
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.7e-67 260.8 820 29.9
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.0e-66 258.8 690 32.6
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.7e-66 258.1 570 37.0
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.9e-66 256.9 626 32.1
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.3e-65 253.8 592 36.0
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.1e-64 251.1 745 31.3
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.1e-63 248.8 623 34.2
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.8e-63 248.1 875 29.0
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.4e-60 238.4 619 35.1
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.6e-59 235.0 677 33.1
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.7e-58 231.5 670 30.9
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 5.1e-58 229.9 709 32.0
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 7.3e-57 226.1 682 31.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.6e-56 223.8 538 33.8
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.9e-52 211.5 815 28.3
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 4.1e-52 210.3 734 30.5
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 9.2e-52 209.1 683 31.3
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.5e-49 201.8 568 34.9
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.7e-45 188.3 885 25.1
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 4.3e-41 173.7 308 41.9
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 6.9e-39 166.4 399 37.3
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.5e-38 163.7 473 33.0
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.9e-37 161.0 316 40.8
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.4e-36 157.9 625 29.3
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 5.4e-36 156.8 315 39.7
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 4.6e-35 153.7 560 30.7
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 5.1e-34 150.2 657 26.8
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 2.5e-33 147.9 304 37.2
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.3e-33 147.5 173 48.6
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.1e-32 144.8 348 37.4
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.3e-29 135.6 295 35.9
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.3e-29 135.6 256 36.3
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.7e-29 135.2 177 47.5
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.2e-29 134.8 157 42.7
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.1e-28 132.5 216 40.3
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 5.5e-28 130.2 792 24.6
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.2e-27 129.0 658 25.8
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 7.9e-27 126.3 560 26.2
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.3e-25 120.9 358 33.0
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 9.6e-25 119.4 323 33.1
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 2.1e-24 118.2 358 32.7
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 2.6e-22 111.3 338 33.7
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.0e-21 109.4 228 34.6
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 1.7e-21 108.6 159 44.0
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 7.9e-19 99.8 609 26.3
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 7.9e-19 99.8 83 54.2
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.0e-18 99.4 381 30.4
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.3e-18 99.0 320 31.9
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.3e-18 98.2 194 38.1
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.5e-14 85.5 111 49.5
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 2.0e-14 85.1 393 29.5
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 4.5e-14 84.0 115 40.9
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 7.6e-14 83.2 263 30.4
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 7.6e-14 83.2 86 48.8
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-13 82.0 506 24.1
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-13 82.0 86 48.8
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.9e-12 78.6 496 23.6
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.6e-11 75.5 65 55.4
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.6e-11 75.5 60 53.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.8e-10 72.0 65 55.4
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.8e-10 72.0 93 37.6
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.0e-10 71.2 88 39.8
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 4.3e-09 67.4 112 38.4
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 9.7e-09 66.2 101 47.5
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 3.7e-08 64.3 261 29.1
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 4.8e-08 63.9 101 42.6


User provided reference genes

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