Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 4.6e-112 407.9 208 100.0
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.3e-109 399.8 208 96.6
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.2e-109 399.1 208 96.2
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.8e-109 398.7 208 96.6
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.8e-109 398.7 208 96.6
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 4.8e-109 397.9 208 95.7
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.1e-108 396.7 208 95.7
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.1e-108 396.7 208 95.7
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.4e-108 396.4 208 96.2
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.4e-108 396.4 208 95.7
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 2.4e-108 395.6 208 94.7
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 2.4e-108 395.6 208 95.2
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 2.4e-108 395.6 208 94.7
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 5.3e-108 394.4 208 95.7
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 1.2e-107 393.3 208 95.2
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.2e-107 393.3 208 94.7
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.5e-107 392.9 207 94.2
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.5e-107 392.9 207 95.2
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-107 392.9 208 94.7
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 2.0e-107 392.5 208 93.8
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 2.6e-107 392.1 206 95.1
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 2.6e-107 392.1 206 95.1
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 94.2
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 94.7
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 94.2
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 94.2
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 5.9e-107 391.0 208 94.2
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 94.7
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.3e-106 389.8 213 93.4
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 93.3
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 92.8
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 93.8
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 92.8
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 6.5e-106 387.5 208 93.3
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 8.5e-106 387.1 206 93.7
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 93.3
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.9e-105 386.0 206 92.7
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.9e-105 386.0 206 93.7
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 92.8
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 92.3
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.5e-105 385.6 210 93.8
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 2.5e-105 385.6 208 92.3
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.5e-105 385.6 207 92.8
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.2e-104 383.3 206 91.7
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 1.2e-104 383.3 207 91.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 91.8
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 91.3
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 91.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 92.3
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 91.7
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 91.3
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.4e-103 379.8 206 90.3
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.8e-103 379.4 208 91.8
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.8e-103 379.4 206 91.7
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 2.3e-103 379.0 206 90.8
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.1e-102 376.7 207 89.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 89.3
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 90.4
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 89.4
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 89.4
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.9e-102 375.9 209 90.4
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.9e-102 375.9 218 87.6
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 3.3e-102 375.2 203 91.1
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 5.7e-102 374.4 208 90.4
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 5.7e-102 374.4 207 91.8
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 5.7e-102 374.4 206 90.3
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 9.7e-102 373.6 209 90.0
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.3e-101 373.2 209 89.5
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.3e-101 373.2 209 89.5
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.7e-101 372.9 207 89.4
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 92.3
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 88.9
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 88.9
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 4.8e-101 371.3 207 88.4
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 88.5
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 88.9
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 88.5
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 205 90.2
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 88.5
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 88.5
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 88.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 5.3e-100 367.9 207 91.3
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 6.9e-100 367.5 208 88.0
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 9.1e-100 367.1 205 89.8
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 87.0
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.0
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 87.5
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 85.6
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 87.0
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 85.1
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 2.9e-98 362.1 208 86.1
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 88.0
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-97 360.1 196 92.3
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.4e-97 359.8 208 86.1
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 7.2e-97 357.5 207 87.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 7.2e-97 357.5 207 87.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.7e-96 355.5 207 86.5
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.6e-94 349.0 207 84.5
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 5.7e-94 347.8 208 86.1
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.3e-93 346.7 208 84.1
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.7e-93 346.3 178 96.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.3e-92 341.3 178 94.9
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.5e-91 339.7 179 93.9
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 4.5e-91 338.2 206 85.9
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 3.8e-90 335.1 178 93.8
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 9.4e-89 330.5 208 76.9
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.0e-87 327.0 210 84.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 3.0e-87 325.5 190 86.8
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 5.2e-87 324.7 179 88.3
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.6e-86 322.4 177 88.1
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 2.2e-85 319.3 208 81.2
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.1e-80 302.8 167 88.6
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.8e-79 299.7 205 77.1
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.5e-78 296.6 156 92.9
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 4.4e-78 295.0 156 92.9
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 9.7e-78 293.9 207 75.4
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 8.8e-71 270.8 232 64.7
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 9.1e-68 260.8 202 62.4
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 3.5e-67 258.8 206 67.5
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.0e-66 257.3 203 60.6
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 2.5e-65 252.7 162 80.9
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 4.2e-65 251.9 200 59.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 4.0e-63 245.4 197 60.4
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 9.2e-60 234.2 120 94.2
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.3e-58 230.3 205 53.2
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 3.3e-57 225.7 133 89.5
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 3.1e-55 219.2 207 53.1
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 5.8e-54 214.9 151 76.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.1e-52 210.7 148 73.0
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.0e-51 206.5 207 52.2
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.9e-49 199.9 209 56.9
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 3.3e-49 199.1 198 48.0
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.2e-46 190.7 196 45.9
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.1e-44 184.1 231 45.0
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.3e-42 176.4 160 65.0
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 8.6e-42 174.5 98 87.8
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.3e-39 166.4 208 49.0
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 3.5e-35 152.5 206 48.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 3.6e-32 142.5 96 78.1
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 6.2e-32 141.7 99 75.8
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.8e-31 140.2 187 39.6
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.4e-30 135.6 74 91.9
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.9e-29 132.1 83 80.7
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 3.2e-28 129.4 92 71.7
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.5e-27 125.9 135 54.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-25 120.6 60 90.0
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.4e-23 113.2 73 79.5
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 5.3e-23 112.1 82 68.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 9.9e-22 107.8 60 86.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 5.8e-14 82.0 61 65.6
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 2.3e-10 70.1 62 64.5
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.8e-08 63.2 39 71.8
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.1e-07 59.7 38 68.4
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.2e-06 57.8 47 68.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.6e-06 56.6 137 24.8


User provided reference genes

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