Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 4.0e-237 824.3 397 100.0
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 1.2e-177 626.7 397 76.6
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 1.8e-152 543.1 396 66.9
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 8.7e-152 540.8 388 66.5
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 7.4e-151 537.7 388 66.8
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 7.4e-151 537.7 392 68.9
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.3e-150 537.0 391 67.3
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 4.8e-150 535.0 393 69.5
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 6.5e-147 524.6 398 66.3
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.1e-146 523.9 384 65.1
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 1.6e-145 520.0 389 66.6
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.6e-145 520.0 391 67.3
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 2.1e-145 519.6 383 64.8
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 7.9e-145 517.7 388 64.4
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 1.0e-144 517.3 386 64.8
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 2.3e-144 516.2 398 65.8
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 5.1e-144 515.0 387 64.9
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 2.2e-142 509.6 390 64.4
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 8.2e-142 507.7 384 64.1
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 2.4e-141 506.1 400 63.8
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 2.0e-140 503.1 390 63.6
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 4.5e-140 501.9 393 65.4
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 1.7e-139 500.0 396 65.2
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 5.0e-139 498.4 400 64.0
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.4e-138 496.9 403 63.5
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 7.2e-138 494.6 386 65.3
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 9.4e-138 494.2 394 63.7
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 9.4e-138 494.2 393 63.1
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 9.4e-138 494.2 386 65.3
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.2e-137 493.8 391 62.7
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 1.6e-137 493.4 389 63.2
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.6e-137 493.4 391 62.4
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 2.1e-137 493.0 386 65.3
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 7.9e-137 491.1 401 61.3
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.0e-136 490.7 385 64.2
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 2.3e-136 489.6 387 64.1
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-135 487.3 392 62.2
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 1.1e-135 487.3 393 62.6
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.1e-135 487.3 392 62.2
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 2.0e-135 486.5 393 61.8
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.1e-133 480.7 393 63.9
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 1.4e-133 480.3 389 64.0
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 1.8e-133 479.9 416 59.4
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 9.1e-133 477.6 386 62.4
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 1.2e-132 477.2 388 61.9
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 3.5e-132 475.7 396 62.6
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 1.0e-131 474.2 399 62.7
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 2.9e-131 472.6 395 61.5
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 8.5e-131 471.1 395 57.2
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 8.5e-131 471.1 414 57.5
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 8.5e-131 471.1 382 62.0
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 1.9e-130 469.9 406 59.1
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 2.5e-130 469.5 378 63.0
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 3.2e-130 469.2 394 57.6
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 5.5e-130 468.4 386 60.1
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 1.6e-129 466.8 400 59.5
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 3.6e-129 465.7 440 53.2
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 4.7e-129 465.3 392 57.9
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 6.1e-129 464.9 400 59.5
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 6.7e-128 461.5 394 60.4
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.0e-127 459.9 323 68.4
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 7.4e-127 458.0 390 59.2
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 2.8e-126 456.1 391 59.1
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 3.1e-125 452.6 392 58.4
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 2.0e-124 449.9 342 66.1
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.6e-124 449.5 392 59.2
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 3.5e-124 449.1 378 61.4
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 1.7e-123 446.8 390 59.0
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.9e-123 446.0 345 63.8
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 1.1e-122 444.1 387 58.1
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 2.7e-121 439.5 402 58.7
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 2.2e-118 429.9 372 58.9
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 2.8e-118 429.5 371 60.6
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 2.8e-118 429.5 394 58.9
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 4.8e-118 428.7 398 57.3
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 3.5e-116 422.5 390 54.6
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 7.2e-114 414.8 394 54.8
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 3.4e-111 406.0 394 55.8
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 7.5e-111 404.8 228 83.3
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.8e-110 402.9 445 50.3
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 7.0e-109 398.3 394 52.5
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 5.0e-107 392.1 328 59.1
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.5e-106 390.6 410 52.7
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.4e-104 384.0 371 55.0
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 6.3e-102 375.2 284 64.8
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 3.2e-101 372.9 324 60.5
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 2.7e-100 369.8 315 60.0
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.8e-96 357.1 397 48.6
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.4e-93 347.4 334 55.4
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 3.2e-93 346.3 396 46.2
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 6.6e-91 338.6 297 55.6
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 8.0e-89 331.6 410 48.3
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 3.1e-88 329.7 385 47.8
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 2.1e-84 317.0 274 57.3
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 9.9e-79 298.1 459 40.3
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 2.5e-74 283.5 276 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 2.1e-73 280.4 311 49.5
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 6.9e-64 248.8 226 55.8
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 3.4e-63 246.5 266 52.3
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 6.4e-62 242.3 239 52.7
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.9e-61 240.7 177 63.3
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 2.7e-60 236.9 142 76.1
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 7.9e-60 235.3 301 45.2
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 1.3e-57 228.0 288 44.8
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 9.9e-55 218.4 366 37.7
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 4.2e-53 213.0 251 49.4
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 4.6e-52 209.5 127 74.0
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 9.6e-50 201.8 113 84.1
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.5e-45 186.0 154 57.8
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.6e-44 184.5 122 64.8
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 1.6e-44 184.5 102 76.5
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 3.5e-44 183.3 112 72.3
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 1.6e-41 174.5 203 46.8
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 2.9e-38 163.7 93 80.6
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 1.0e-35 155.2 86 82.6
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 1.6e-28 131.3 131 57.3
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 3.0e-27 127.1 111 58.6
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.2e-23 115.2 68 75.0
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 2.6e-23 114.0 93 66.7
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 4.5e-23 113.2 83 59.0
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 2.2e-22 110.9 249 32.1
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 1.6e-20 104.8 102 49.0
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 1.6e-20 104.8 102 49.0
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 9.1e-16 89.0 50 76.0
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 9.1e-16 89.0 60 63.3
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.5e-15 88.2 89 47.2
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 2.6e-15 87.4 57 66.7
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 3.8e-14 83.6 49 71.4
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 1.9e-13 81.3 49 67.3
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 8.0e-12 75.9 169 32.0
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 8.0e-12 75.9 169 32.0
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 7.5e-10 69.3 75 52.0
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 9.1e-08 62.4 93 35.5
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 5.0e-06 56.6 144 29.9


User provided reference genes

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