Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 2.2e-120 435.6 220 100.0
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 3.3e-76 288.9 224 65.6
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 6.3e-75 284.6 228 65.4
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 5.3e-74 281.6 226 66.8
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 6.9e-74 281.2 227 64.3
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.5e-73 280.0 227 63.4
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 2.0e-73 279.6 224 64.7
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 1.9e-71 273.1 225 64.9
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 3.2e-71 272.3 227 64.3
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 4.2e-71 271.9 227 62.6
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.2e-70 270.4 230 60.0
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 2.7e-70 269.2 224 62.9
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 3.6e-70 268.9 224 62.5
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 6.1e-70 268.1 226 59.7
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.0e-69 267.3 211 66.8
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.0e-69 267.3 224 63.4
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 3.0e-69 265.8 223 61.9
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 3.9e-69 265.4 226 61.1
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 3.9e-69 265.4 226 59.3
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 6.7e-69 264.6 226 58.8
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 8.7e-69 264.2 224 62.1
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 1.1e-68 263.8 199 71.4
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 1.1e-68 263.8 211 67.3
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.5e-68 263.5 224 60.7
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 7.4e-68 261.2 226 59.3
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.6e-67 260.0 221 63.8
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.6e-67 260.0 198 68.7
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 8.2e-67 257.7 198 68.7
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 1.8e-66 256.5 199 67.8
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 2.6e-65 252.7 223 61.9
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 3.4e-65 252.3 221 60.6
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 5.9e-65 251.5 221 59.7
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 1.7e-64 250.0 221 59.7
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 3.8e-64 248.8 221 61.1
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 1.1e-63 247.3 223 61.0
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.4e-63 246.9 222 60.4
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 1.9e-63 246.5 223 59.6
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 7.2e-63 244.6 222 59.5
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 4.6e-62 241.9 223 60.5
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 7.9e-62 241.1 227 55.9
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.0e-61 240.7 218 60.6
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.0e-61 240.7 218 60.1
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.5e-60 236.9 226 58.4
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 2.6e-60 236.1 172 72.1
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 7.4e-60 234.6 223 59.6
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.3e-59 233.8 220 60.9
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 1.7e-59 233.4 202 60.9
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 1.1e-58 230.7 227 55.5
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 1.2e-57 227.3 232 53.4
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.5e-57 226.9 224 58.0
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 2.6e-57 226.1 227 56.4
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 1.0e-56 224.2 223 53.4
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.3e-56 223.8 183 63.4
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.3e-56 223.8 183 63.4
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.9e-55 219.9 201 60.2
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 3.2e-55 219.2 212 57.1
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 5.5e-55 218.4 183 63.4
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 2.7e-54 216.1 219 52.1
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 4.8e-51 205.3 206 54.9
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 2.0e-49 199.9 225 48.9
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 2.0e-49 199.9 183 60.1
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 4.5e-49 198.7 226 48.7
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 7.7e-49 198.0 140 69.3
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 2.7e-46 189.5 203 47.8
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 2.6e-44 183.0 197 51.3
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 9.7e-44 181.0 115 79.1
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.5e-41 172.6 124 71.0
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.5e-41 172.6 124 71.0
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 8.0e-38 161.4 132 63.6
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.4e-37 160.6 144 57.6
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 2.3e-37 159.8 143 60.8
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 9.8e-36 154.5 224 43.8
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.3e-35 154.1 135 64.4
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 8.3e-35 151.4 224 43.3
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 7.0e-34 148.3 109 67.0
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.5e-33 146.0 163 47.2
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.7e-32 143.7 111 69.4
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.2e-30 137.5 227 43.6
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 5.7e-28 128.6 128 51.6
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 7.5e-28 128.3 114 57.0
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 7.5e-28 128.3 117 53.8
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.1e-26 122.9 135 52.6
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 1.6e-25 120.6 113 57.5
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 7.8e-25 118.2 75 78.7
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 2.3e-24 116.7 72 80.6
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.1e-23 114.4 146 46.6
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.5e-23 114.0 106 59.4
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 1.9e-23 113.6 116 53.4
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 2.5e-23 113.2 102 58.8
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 4.7e-22 109.0 111 53.2
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 1.8e-21 107.1 119 50.4
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 9.8e-20 101.3 95 55.8
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 2.0e-17 93.6 85 56.5
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 2.0e-17 93.6 94 57.4
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 5.9e-17 92.0 76 59.2
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 5.9e-17 92.0 88 55.7
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 3.3e-15 86.3 219 25.1
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 8.0e-14 81.6 90 43.3
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.1e-13 79.7 64 64.1
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.0e-13 79.3 99 38.4
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 2.6e-12 76.6 162 27.2
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 8.3e-11 71.6 74 52.7
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 1.5e-07 60.8 79 36.7


User provided reference genes

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