Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 0.0e+00 1167.1 568 100.0
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 0.0e+00 1099.3 568 92.8
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 0.0e+00 1095.5 568 92.4
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 0.0e+00 1091.6 568 91.7
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 0.0e+00 1081.2 568 90.8
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 0.0e+00 1079.7 568 90.1
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 0.0e+00 1079.3 564 90.4
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 0.0e+00 1078.5 568 90.7
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 0.0e+00 1077.8 568 89.8
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1075.8 561 91.8
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 0.0e+00 1075.1 557 91.9
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 7.8e-312 1073.2 568 90.0
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 7.8e-312 1072.8 568 90.0
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.9e-311 1071.6 568 90.3
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 3.5e-311 1070.8 567 89.6
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 4.7e-311 1070.5 571 90.7
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 5.8e-311 1070.1 563 90.8
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 3.0e-310 1067.8 568 89.4
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 8.5e-310 1066.2 568 88.9
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.1e-309 1065.8 561 90.7
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 5.5e-309 1063.5 568 89.1
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.6e-308 1062.0 563 90.2
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.6e-308 1062.0 567 89.4
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.7e-308 1060.4 563 90.1
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 8.0e-308 1059.7 564 89.7
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.4e-307 1058.9 567 89.1
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.8e-307 1058.5 568 88.0
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.8e-307 1058.5 567 89.2
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.8e-307 1058.5 561 90.6
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 5.2e-307 1057.0 567 89.2
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 6.8e-307 1056.6 568 88.4
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 1.2e-306 1055.8 565 88.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.5e-306 1055.4 563 89.5
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 4.4e-306 1053.9 568 88.6
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 568 88.2
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 568 88.9
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 567 88.5
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 561 89.5
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 8.3e-305 1049.7 568 87.9
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.8e-304 1048.5 568 87.1
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 2.4e-304 1048.1 568 88.6
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 7.0e-304 1046.6 568 87.3
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 9.2e-304 1046.2 561 88.8
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 2.7e-303 1044.6 568 87.0
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 568 87.9
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 568 88.0
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 5.0e-302 1040.4 568 87.0
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 568 86.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 3.3e-301 1037.7 568 87.3
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 3.3e-301 1037.7 568 87.3
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 5.6e-301 1036.9 563 87.4
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 5.6e-301 1036.9 563 87.4
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 5.6e-301 1036.9 568 88.2
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.6e-300 1035.4 568 87.7
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.6e-300 1035.4 562 86.8
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 8.0e-300 1033.1 565 86.0
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 563 87.9
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 5.2e-299 1030.4 563 87.6
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 6.8e-299 1030.0 563 87.6
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.0e-298 1028.5 563 87.2
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 566 86.9
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 4.9e-297 1023.8 563 87.2
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 2.4e-296 1021.5 561 87.2
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 568 84.9
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 565 83.9
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.3e-294 1015.0 563 86.0
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.0e-294 1014.6 565 85.5
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 3.9e-294 1014.2 571 84.9
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 552 86.1
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.5e-293 1011.5 569 84.4
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 5.6e-293 1010.4 565 83.2
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.8e-292 1008.1 564 85.5
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 556 86.5
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 551 86.2
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 3.1e-291 1004.6 568 84.5
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 4.0e-291 1004.2 565 83.4
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 4.0e-291 1004.2 550 86.2
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 557 86.5
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 7.5e-290 1000.0 565 84.6
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.7e-289 997.7 561 84.3
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 3.7e-289 997.7 564 85.1
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 3.2e-288 994.6 570 84.2
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.4e-288 993.8 568 84.3
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.0e-287 991.9 534 87.1
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 7.8e-287 989.9 565 83.5
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.0e-286 989.6 567 84.0
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.7e-286 988.8 549 85.2
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.5e-285 985.7 550 85.1
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-285 984.6 564 83.5
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.3e-285 984.6 549 84.7
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 5.6e-285 983.8 564 83.2
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 9.5e-285 983.0 564 82.4
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.6e-284 982.2 564 83.5
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 2.1e-284 981.9 564 83.2
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 2.8e-284 981.5 564 83.3
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-284 981.5 564 83.3
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-284 981.5 564 83.3
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 6.2e-284 980.3 564 83.2
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 8.1e-284 979.9 564 83.0
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 8.1e-284 979.9 564 83.0
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.4e-283 979.2 564 83.2
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.4e-283 979.2 564 81.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.8e-283 978.8 564 82.8
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 2.3e-283 978.4 564 83.0
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.3e-283 978.4 564 82.6
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.0e-283 977.6 564 82.6
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 5.8e-282 973.8 564 82.3
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.9e-282 973.0 564 82.8
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 82.4
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 82.4
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.9e-281 971.5 564 81.9
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 4.1e-280 967.6 564 82.1
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.2e-279 966.1 564 82.1
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.6e-279 965.7 562 83.1
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 6.0e-279 963.8 568 80.8
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 3.0e-278 961.4 564 80.9
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 5.1e-278 960.7 568 79.8
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.1e-277 959.5 564 81.4
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 3.3e-277 958.0 562 82.6
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 7.3e-277 956.8 564 81.4
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.5e-274 949.1 571 79.3
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.0e-274 948.7 562 80.6
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 5.8e-274 947.2 571 78.8
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.4e-272 941.8 563 82.2
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 4.1e-272 941.0 570 79.6
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 7.3e-269 930.2 568 77.6
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 4.6e-263 911.0 564 78.4
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-262 909.4 524 82.4
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.1e-261 906.4 574 75.3
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 2.8e-260 901.7 567 75.1
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 3.5e-255 884.8 565 74.7
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.3e-254 882.9 565 73.1
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 4.3e-253 877.9 569 74.9
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.3e-252 876.3 557 78.3
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 6.2e-252 874.0 568 74.6
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 4.0e-251 871.3 562 74.4
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.9e-249 864.4 566 72.6
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 6.9e-243 844.0 469 83.6
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.2e-239 833.2 564 70.7
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 8.5e-225 783.9 418 89.0
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.7e-218 760.8 563 68.4
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.1e-211 738.4 425 81.6
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 3.5e-210 735.3 567 65.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.3e-190 669.5 373 82.8
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.3e-180 637.1 541 56.2
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.2e-173 614.0 417 73.9
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.8e-167 592.8 329 82.7
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 8.3e-164 581.3 488 54.7
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.9e-163 580.1 523 52.4
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 3.9e-161 572.4 292 88.7
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 4.0e-150 535.8 418 60.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.6e-143 512.7 567 51.1
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.5e-141 505.8 568 50.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 8.4e-132 474.9 318 71.7
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 5.6e-128 462.2 468 54.9
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-87 327.0 549 38.8
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.8e-87 326.2 213 74.2
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.2e-80 305.1 491 36.3
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 3.1e-65 253.8 197 62.9
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 3.4e-64 250.4 197 61.9
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 4.9e-63 246.5 169 70.4
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.7e-52 211.5 121 83.5
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.2e-48 198.7 133 75.9
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.1e-46 192.2 128 76.6
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.5e-45 187.2 132 68.2
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-43 182.2 166 60.2
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 4.3e-43 180.3 166 60.2
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 7.3e-43 179.5 166 60.2
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 8.1e-42 176.0 166 59.6
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 9.9e-40 169.1 319 32.9
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.0e-32 144.8 87 77.0
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 4.2e-30 137.1 498 26.1
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.1e-29 134.8 95 67.4
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 8.7e-28 129.4 85 65.9
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.1e-27 129.0 76 73.7
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 9.6e-27 125.9 213 38.5
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 2.1e-21 108.2 184 40.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 8.7e-20 102.8 166 41.6
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.4e-17 95.5 103 45.6
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 3.7e-10 70.9 46 63.0


User provided reference genes

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