Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 0.0e+00 1906.3 963 100.0
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1531.5 951 80.8
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 0.0e+00 1530.8 951 80.9
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1517.3 951 80.1
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 0.0e+00 1434.5 949 76.5
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 0.0e+00 1168.7 951 63.8
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 0.0e+00 1157.9 970 62.3
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 0.0e+00 1154.4 958 61.4
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 0.0e+00 1135.6 954 61.3
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 0.0e+00 1135.2 960 61.7
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 0.0e+00 1124.4 959 60.9
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 0.0e+00 1103.2 955 59.8
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 0.0e+00 1102.4 963 59.3
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 0.0e+00 1097.0 976 58.5
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 0.0e+00 1092.8 945 59.0
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 0.0e+00 1079.3 945 58.6
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 0.0e+00 1077.4 963 57.7
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 4.1e-304 1048.1 943 58.3
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 4.2e-293 1011.5 971 55.4
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 5.5e-293 1011.1 962 56.2
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 2.3e-291 1005.7 965 56.0
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 5.4e-288 994.6 956 54.7
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 5.0e-270 934.9 951 52.2
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 4.0e-267 925.2 935 52.3
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 5.2e-267 924.9 953 51.8
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.5e-266 923.3 959 52.3
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 9.8e-266 920.6 950 51.6
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.6e-263 913.3 957 50.7
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 6.2e-260 901.4 955 51.0
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 3.9e-254 882.1 954 52.3
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 2.4e-251 872.8 1039 47.4
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 1.5e-250 870.2 1031 47.3
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 6.6e-246 854.7 955 48.9
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.4e-243 847.0 959 49.6
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 5.1e-238 828.6 754 56.1
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 5.6e-237 825.1 1174 42.6
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 2.0e-205 720.3 484 72.1
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 9.1e-203 711.4 608 59.7
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 2.9e-201 706.4 519 69.0
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 3.2e-200 703.0 496 70.0
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 3.6e-199 699.5 463 73.4
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 9.1e-195 684.9 516 65.1
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.9e-192 677.2 521 65.5
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 5.2e-190 669.1 455 70.1
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 4.4e-189 666.0 473 67.7
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 3.7e-188 662.9 496 66.3
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 9.1e-187 658.3 448 70.5
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 7.7e-186 655.2 471 66.7
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.9e-184 650.6 461 69.4
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 5.5e-184 649.0 1274 34.5
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 2.1e-183 647.1 466 69.3
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 2.7e-183 646.7 452 67.9
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 1.7e-180 637.5 458 64.2
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 2.8e-180 636.7 737 47.8
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 3.2e-176 623.2 460 66.5
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 4.0e-174 616.3 478 63.6
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.2e-173 614.8 489 62.6
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.3e-172 611.3 488 60.0
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 2.2e-172 610.5 458 64.0
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 2.8e-172 610.1 468 64.3
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 8.3e-172 608.6 468 64.3
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 4.1e-171 606.3 464 63.6
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.2e-170 604.7 471 61.6
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 2.7e-170 603.6 384 75.3
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 5.9e-170 602.4 458 61.4
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 6.1e-167 592.4 496 57.3
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.0e-166 591.7 496 57.7
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.0e-166 591.7 489 58.3
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 2.4e-163 580.5 1044 35.2
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 4.1e-163 579.7 472 60.4
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 9.2e-163 578.6 458 60.9
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 2.7e-162 577.0 460 62.4
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 4.6e-162 576.2 459 61.9
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.3e-161 573.9 460 62.8
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.9e-160 570.9 458 60.7
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 1.9e-160 570.9 461 63.6
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 3.6e-159 566.6 454 62.1
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.0e-158 565.1 460 62.0
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 6.8e-158 562.4 455 61.3
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 6.8e-158 562.4 1087 34.2
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 2.6e-157 560.5 450 61.8
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 5.8e-157 559.3 450 61.6
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 1.3e-156 558.1 733 45.2
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 1.1e-155 555.1 450 61.8
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 1.9e-155 554.3 450 61.8
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 4.1e-155 553.1 1032 36.0
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 2.7e-154 550.4 460 60.7
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 2.3e-153 547.4 460 57.0
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.3e-153 547.4 455 59.6
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 2.9e-148 530.4 352 72.2
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.9e-147 527.7 1087 33.8
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 2.1e-146 524.2 475 57.7
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 3.5e-146 523.5 514 55.3
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 4.4e-141 506.5 341 70.4
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 2.1e-138 497.7 458 53.1
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 7.8e-138 495.7 463 57.2
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 7.8e-138 495.7 463 57.2
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 6.6e-137 492.7 364 65.7
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.4e-131 474.9 364 63.2
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 2.1e-130 471.1 709 40.3
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 5.1e-129 466.5 622 44.4
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 4.9e-124 449.9 471 50.1
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 3.2e-123 447.2 961 33.3
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 9.3e-123 445.7 359 61.6
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 9.9e-117 425.6 374 58.6
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 5.5e-115 419.9 553 43.4
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 7.4e-112 409.5 469 43.7
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 5.8e-109 399.8 363 57.0
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 2.5e-99 367.9 456 44.1
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 6.1e-98 363.2 471 41.0
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.6e-95 355.1 367 51.2
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.5e-91 341.3 257 66.1
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 5.5e-75 287.0 462 40.9
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 1.5e-72 278.9 316 44.9
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 9.7e-72 276.2 196 72.4
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 7.0e-70 270.0 206 65.0
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 2.9e-68 264.6 179 73.7
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 6.3e-63 246.9 257 47.1
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.9e-59 235.3 168 63.7
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 4.7e-58 230.7 189 63.0
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 3.6e-42 177.9 124 66.1
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 4.6e-37 161.0 228 43.4
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 1.1e-35 156.4 313 35.5
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 1.7e-28 132.5 146 49.3
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.2e-18 99.8 71 59.2
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.8e-17 95.9 73 61.6
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 7.3e-11 73.9 79 50.6
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 1.4e-09 69.7 124 37.1
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 4.9e-07 61.2 42 52.4


User provided reference genes

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