Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 2.1e-152 542.3 272 100.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.1e-128 462.6 270 84.8
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 4.8e-125 451.4 272 82.4
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 9.0e-124 447.2 271 83.0
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 4.9e-122 441.4 272 81.2
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 3.2e-121 438.7 273 81.3
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.5e-118 429.9 273 79.5
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.9e-118 429.5 266 81.6
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.7e-118 427.9 274 79.6
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 5.7e-118 427.9 249 84.7
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 7.4e-118 427.6 254 81.9
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 4.8e-117 424.9 250 84.0
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 8.2e-117 424.1 275 78.2
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 9.0e-116 420.6 248 84.7
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.2e-115 420.2 254 81.9
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.2e-115 420.2 254 79.9
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 1.5e-115 419.9 236 86.9
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 2.0e-115 419.5 254 81.9
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 4.5e-115 418.3 271 77.5
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 7.6e-115 417.5 272 76.8
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 2.2e-114 416.0 260 78.8
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.1e-113 413.7 271 76.4
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.1e-113 413.7 252 81.7
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-113 413.7 252 81.0
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.4e-113 413.3 257 78.2
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-113 413.3 252 81.0
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 3.2e-113 412.1 273 75.8
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 5.5e-113 411.4 252 81.3
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 5.5e-113 411.4 253 79.1
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.7e-112 409.1 250 78.8
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 4.6e-112 408.3 269 75.8
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.0e-111 407.1 243 81.1
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.3e-111 406.8 252 77.8
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.8e-111 406.4 251 78.5
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.8e-111 406.4 251 81.3
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 3.9e-111 405.2 287 75.6
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 3.9e-111 405.2 256 78.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 6.7e-111 404.4 271 74.9
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.1e-110 403.7 267 75.3
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.5e-110 403.3 271 76.4
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 2.5e-110 402.5 263 75.7
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 2.5e-110 402.5 290 73.1
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 3.3e-110 402.1 248 80.6
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 7.4e-110 401.0 262 72.9
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 2.8e-109 399.1 249 78.3
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.8e-109 399.1 242 81.4
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 3.7e-109 398.7 257 74.7
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.1e-108 397.1 249 77.9
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.1e-108 397.1 249 77.9
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.4e-108 396.7 249 77.1
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.4e-108 396.7 248 78.2
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.4e-108 396.7 248 78.2
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.4e-108 396.7 319 66.8
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.4e-108 396.7 256 76.6
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.8e-108 396.4 270 74.4
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 2.4e-108 396.0 251 75.7
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 2.4e-108 396.0 251 76.1
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 2.4e-108 396.0 251 76.1
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 3.1e-108 395.6 251 76.1
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.2e-107 393.7 256 75.8
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.2e-107 393.7 256 75.8
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.0e-106 390.6 246 76.0
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.3e-106 390.2 275 71.6
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.4e-105 386.7 254 74.8
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 2.5e-105 386.0 287 70.7
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 5.5e-105 384.8 245 79.2
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 9.4e-105 384.0 285 69.1
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 2.7e-104 382.5 266 73.7
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 3.6e-104 382.1 268 72.4
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 3.6e-104 382.1 255 73.7
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.8e-103 379.8 249 73.9
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 2.3e-103 379.4 269 71.7
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 3.9e-103 378.6 251 75.3
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.9e-103 378.6 261 75.1
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 3.3e-102 375.6 270 71.9
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 4.3e-102 375.2 271 72.0
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 4.8e-101 371.7 245 72.2
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.6e-99 365.9 272 68.4
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.5e-99 365.2 255 71.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 5.9e-99 364.8 271 68.6
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 5.9e-99 364.8 247 74.5
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.0e-98 364.0 269 69.5
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 9.4e-97 357.5 205 83.9
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 4.7e-96 355.1 253 68.8
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 8.8e-95 350.9 253 68.0
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 3.3e-94 349.0 241 70.5
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.1e-92 344.0 209 78.9
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 4.1e-92 342.0 269 65.8
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 9.4e-89 330.9 254 66.9
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.0e-86 323.2 303 60.7
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.3e-85 320.5 303 61.1
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 2.2e-85 319.7 255 63.5
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 3.1e-84 315.8 272 59.9
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 4.5e-83 312.0 263 63.1
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 8.5e-82 307.8 169 85.8
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 4.2e-81 305.4 272 60.3
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 2.1e-80 303.1 250 63.2
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 2.7e-80 302.8 274 62.0
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 6.1e-80 301.6 183 78.7
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 5.2e-79 298.5 269 59.5
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 9.8e-78 294.3 264 59.1
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 4.8e-77 292.0 239 63.6
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 7.0e-76 288.1 251 59.4
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 7.7e-75 284.6 270 55.9
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.7e-74 283.5 257 54.9
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.1e-72 276.6 270 56.3
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.3e-69 267.3 252 58.3
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.7e-66 256.9 168 74.4
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.2e-64 250.8 342 48.8
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.4e-61 238.4 158 72.8
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.0e-59 233.4 170 70.0
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 6.2e-56 221.9 292 45.9
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 3.4e-54 216.1 236 50.8
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 6.4e-53 211.8 255 46.3
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 8.6e-50 201.4 220 50.0
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 3.5e-43 179.5 246 41.9
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.0e-43 178.7 128 69.5
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.1e-39 167.9 114 71.1
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-36 157.9 155 58.1
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 5.6e-33 145.6 85 82.4
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 2.6e-30 136.7 76 85.5
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 9.3e-28 128.3 101 66.3
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-26 123.6 131 53.4
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 4.9e-21 105.9 84 63.1
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 3.9e-18 96.3 164 37.2
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 6.7e-18 95.5 81 61.7
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.2e-13 80.5 38 92.1
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.9e-12 77.4 54 66.7
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 2.7e-11 73.6 69 58.0
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 5.1e-10 69.3 37 86.5
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 5.1e-10 69.3 37 86.5
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 8.7e-10 68.6 66 56.1
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-08 63.9 46 67.4
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 2.4e-07 60.5 51 58.8
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 2.6e-06 57.0 36 75.0
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 4.5e-06 56.2 40 60.0


User provided reference genes

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