Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 3.9e-88 328.2 174 100.0
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 5.3e-77 291.2 174 83.3
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 6.9e-77 290.8 174 82.2
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 3.4e-76 288.5 174 80.5
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 7.6e-76 287.3 174 81.6
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 1.0e-75 287.0 174 80.5
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.3e-75 286.6 174 81.6
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 2.9e-75 285.4 174 79.3
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 3.8e-75 285.0 174 79.9
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 3.8e-75 285.0 174 79.3
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 4.9e-75 284.6 174 81.0
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 8.4e-75 283.9 174 78.7
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 8.4e-75 283.9 174 79.3
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 80.5
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 78.7
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.5e-74 282.3 174 78.2
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 2.5e-74 282.3 174 78.2
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 9.3e-74 280.4 174 78.2
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 2.7e-73 278.9 174 77.6
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 78.2
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 77.0
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 7.9e-73 277.3 174 76.4
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 1.0e-72 276.9 174 79.3
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 1.0e-72 276.9 174 79.9
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.8e-72 276.2 194 74.2
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 79.9
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 75.9
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 75.9
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 6.7e-72 274.2 174 74.7
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 8.7e-72 273.9 174 75.9
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 8.7e-72 273.9 174 75.9
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 8.7e-72 273.9 174 77.0
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 8.7e-72 273.9 174 76.4
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 1.9e-71 272.7 174 75.9
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.9e-71 272.7 174 75.9
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 75.3
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 79.9
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 9.7e-71 270.4 171 81.3
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 79.9
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 74.1
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.3
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 73.0
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 73.6
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 2.6e-68 262.3 175 74.3
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 7.6e-68 260.8 175 73.7
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 7.6e-68 260.8 173 78.0
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 71.8
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 71.3
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 71.3
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 71.3
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 71.3
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 71.3
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 5.0e-67 258.1 198 68.7
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 5.0e-67 258.1 174 70.7
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 71.3
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 71.3
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.4e-66 256.5 174 70.7
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 72.4
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 70.1
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 67.8
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 70.7
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 69.5
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 70.1
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 70.1
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 70.7
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 4.6e-65 251.5 143 82.5
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 6.1e-65 251.1 174 67.8
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 7.9e-65 250.8 174 69.0
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 1.3e-64 250.0 171 75.4
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 2.3e-64 249.2 174 69.0
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 3.0e-64 248.8 173 68.8
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 67.8
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 8.7e-64 247.3 174 67.2
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.1e-63 246.9 174 67.8
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.1e-63 246.9 174 68.4
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 67.8
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 2.5e-63 245.7 174 74.7
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 3.3e-63 245.4 171 70.8
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 67.2
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 74.7
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 67.8
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 73.6
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 67.8
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 7.4e-63 244.2 158 74.7
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 73.6
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 2.8e-62 242.3 174 73.6
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 3.7e-62 241.9 174 73.0
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 3.7e-62 241.9 174 73.0
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 4.8e-62 241.5 174 73.0
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 6.3e-62 241.1 174 68.4
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.8e-61 239.6 174 67.2
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 1.8e-61 239.6 174 66.1
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.5e-60 236.5 174 71.3
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 2.0e-60 236.1 166 67.5
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 2.0e-60 236.1 166 67.5
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 4.5e-60 235.0 174 64.9
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 5.9e-60 234.6 174 71.8
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.7e-59 233.0 174 67.2
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.2e-59 232.6 151 71.5
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.9e-59 232.3 174 68.4
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 5.0e-59 231.5 151 71.5
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 69.5
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.4e-58 229.9 146 76.0
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 1.9e-58 229.6 174 71.3
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 2.5e-58 229.2 174 69.0
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.1e-57 226.1 174 68.4
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 7.9e-57 224.2 175 63.4
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 5.1e-56 221.5 174 68.4
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.1e-55 220.3 196 61.2
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 2.8e-54 215.7 171 66.1
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 3.7e-54 215.3 171 66.1
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 3.7e-54 215.3 147 70.7
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 1.1e-53 213.8 122 82.0
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 1.0e-51 207.2 122 77.0
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 8.5e-51 204.1 239 50.2
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.5e-50 201.4 122 77.9
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 1.6e-49 199.9 176 59.7
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.5e-47 193.4 175 58.3
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 9.7e-47 190.7 182 60.4
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 1.7e-43 179.9 171 52.0
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 3.2e-42 175.6 95 85.3
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 1.8e-40 169.9 176 51.7
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 5.7e-39 164.9 94 81.9
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 7.5e-39 164.5 173 48.0
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 3.7e-38 162.2 94 79.8
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.4e-37 160.2 174 47.1
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 2.0e-36 156.4 174 50.0
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 5.9e-36 154.8 93 73.1
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 1.0e-27 127.5 85 67.1
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 9.5e-26 120.9 96 54.2
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 2.0e-23 113.2 67 73.1
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 3.4e-23 112.5 75 65.3
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 1.8e-21 106.7 127 47.2
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 1.6e-20 103.6 128 41.4
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 2.7e-20 102.8 85 69.4
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 1.1e-18 97.4 134 38.1
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.5e-18 97.1 55 74.5
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.1e-17 93.2 53 75.5
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.6e-15 86.3 48 77.1
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 4.6e-12 75.5 80 47.5
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.7e-11 73.6 38 78.9
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 3.9e-11 72.4 141 34.0
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 2.6e-07 59.7 150 31.3


User provided reference genes

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