Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 6.6e-69 263.8 128 100.0
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 3.2e-63 245.0 127 92.9
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 3.2e-63 245.0 127 92.9
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 7.1e-63 243.8 128 92.2
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.6e-62 242.7 127 92.1
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.3e-59 233.0 127 88.2
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.4e-58 229.6 127 85.8
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.4e-58 229.6 127 85.8
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.8e-58 229.2 127 86.6
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 2.4e-58 228.8 127 84.3
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 4.0e-58 228.0 127 86.6
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.9e-58 227.3 124 86.3
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 9.0e-58 226.9 127 85.8
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 9.0e-58 226.9 125 87.2
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 9.0e-58 226.9 127 87.4
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 1.2e-57 226.5 127 86.6
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.2e-57 226.5 127 86.6
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.2e-57 226.5 127 86.6
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.2e-57 226.5 127 85.0
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.2e-57 226.5 124 86.3
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 2.0e-57 225.7 127 85.8
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 2.6e-57 225.3 127 82.7
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.4e-57 224.9 127 85.8
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.4e-57 224.9 127 85.8
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 3.4e-57 224.9 125 86.4
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 5.8e-57 224.2 127 83.5
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 7.6e-57 223.8 127 84.3
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.6e-57 223.8 127 85.8
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 7.6e-57 223.8 127 85.0
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 7.6e-57 223.8 122 87.7
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.3e-56 223.0 127 81.9
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 2.2e-56 222.2 118 89.0
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.2e-56 222.2 127 81.1
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.9e-56 221.9 118 89.0
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.9e-56 221.9 127 85.0
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 3.8e-56 221.5 127 84.3
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 3.8e-56 221.5 127 81.1
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 4.9e-56 221.1 124 83.1
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 6.5e-56 220.7 127 82.7
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 6.5e-56 220.7 124 83.9
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 6.5e-56 220.7 127 81.1
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 8.4e-56 220.3 124 83.1
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.1e-55 219.9 124 83.9
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 1.1e-55 219.9 127 82.7
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 1.1e-55 219.9 127 84.3
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 1.4e-55 219.5 128 83.6
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 1.4e-55 219.5 125 84.8
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.9e-55 219.2 127 81.1
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.5e-55 218.8 127 84.3
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 2.5e-55 218.8 124 82.3
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.2e-55 218.4 124 84.7
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 3.2e-55 218.4 127 81.9
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 3.2e-55 218.4 124 82.3
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 5.5e-55 217.6 127 81.9
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 5.5e-55 217.6 127 81.1
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 5.5e-55 217.6 124 82.3
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.2e-54 216.5 127 79.5
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.6e-54 216.1 124 80.6
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.6e-54 216.1 124 80.6
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.6e-54 216.1 124 80.6
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.1e-54 215.7 128 80.5
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 2.1e-54 215.7 128 81.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 3.5e-54 214.9 128 80.5
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 3.5e-54 214.9 128 82.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 4.6e-54 214.5 128 81.2
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 6.0e-54 214.2 127 80.3
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 6.0e-54 214.2 127 80.3
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 81.1
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 79.5
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 78.7
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 79.5
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 79.5
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.8e-53 212.6 127 79.5
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.8e-53 212.6 125 82.4
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.3e-53 212.2 127 80.3
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 2.3e-53 212.2 124 82.3
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 79.5
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 79.5
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 79.5
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 79.5
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.0e-53 211.8 124 80.6
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 79.5
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 79.5
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 79.5
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 3.9e-53 211.5 124 81.5
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 5.1e-53 211.1 127 79.5
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 6.7e-53 210.7 124 80.6
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 6.7e-53 210.7 124 81.5
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 6.7e-53 210.7 127 78.7
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 8.7e-53 210.3 125 80.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 8.7e-53 210.3 124 79.8
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.5e-52 209.5 128 79.7
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 78.7
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.5e-52 209.5 128 79.7
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.5e-52 209.5 120 80.0
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.3e-52 208.4 128 78.9
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 5.7e-52 207.6 124 78.2
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 9.6e-52 206.8 124 79.8
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 9.6e-52 206.8 128 78.1
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 9.6e-52 206.8 120 79.2
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.3e-51 206.5 128 78.1
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 77.4
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 2.1e-51 205.7 127 77.2
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.7e-51 204.9 124 77.4
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 8.2e-51 203.8 127 78.0
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 9.0e-50 200.3 120 76.7
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.6e-49 198.7 125 74.4
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 5.8e-49 197.6 127 77.2
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 6.1e-46 187.6 167 58.7
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 7.9e-46 187.2 127 75.6
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 3.9e-45 184.9 108 77.8
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.3e-44 181.8 106 82.1
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 9.7e-44 180.3 131 71.0
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 9.0e-42 173.7 112 74.1
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 8.5e-40 167.2 87 93.1
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 2.7e-38 162.2 103 78.6
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.8e-35 151.4 82 86.6
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.1e-34 150.2 82 82.9
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 3.9e-29 131.7 74 87.8
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.7e-27 125.2 76 76.3
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 4.1e-26 121.7 88 64.8
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.2e-25 120.2 127 55.1
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.2e-25 120.2 98 60.2
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 4.5e-25 118.2 89 65.2
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.9e-23 112.8 61 88.5
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.4e-23 110.5 67 79.1
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.0e-21 107.1 67 79.1
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.8e-21 106.3 57 89.5
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 5.7e-20 101.3 82 54.9
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 3.5e-17 92.0 51 88.2
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.1e-15 87.0 97 48.5
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.8e-13 79.7 114 45.6
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.6e-09 66.6 40 70.0
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 8.5e-08 60.8 36 77.8
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 5.5e-07 58.2 59 42.4
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.6e-06 55.5 50 62.0


User provided reference genes

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