Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.1e-172 609.0 321 100.0
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.3e-150 535.8 313 91.7
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.4e-77 292.7 314 57.0
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 4.8e-76 288.9 321 57.3
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.0e-74 283.5 323 57.0
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 1.5e-45 187.6 372 43.0
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 2.6e-45 186.8 356 43.0
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.2e-42 177.9 361 41.8
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.1e-38 164.9 321 43.3
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 8.9e-38 161.8 326 42.9
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.2e-37 161.4 331 44.1
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 9.9e-37 158.3 367 39.5
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 2.9e-36 156.8 321 43.0
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.9e-35 154.1 340 40.9
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.4e-35 153.7 328 42.4
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 3.2e-35 153.3 323 41.5
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 9.2e-35 151.8 334 42.8
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.2e-34 151.4 324 41.0
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.0e-33 146.7 346 41.9
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 5.1e-33 146.0 360 36.7
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 6.6e-33 145.6 360 36.9
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 9.6e-32 141.7 358 36.9
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.6e-31 141.0 324 39.5
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 6.2e-31 139.0 333 38.4
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.4e-30 137.9 318 38.7
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.4e-30 137.9 335 38.5
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.8e-30 137.5 324 40.7
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 2.4e-30 137.1 360 38.9
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 3.1e-30 136.7 322 40.4
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 4.0e-30 136.3 320 39.4
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 5.2e-30 136.0 332 40.4
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 5.2e-30 136.0 362 37.6
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 5.2e-30 136.0 349 37.0
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 5.2e-30 136.0 329 38.9
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 1.5e-29 134.4 325 40.9
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.0e-29 134.0 322 40.1
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 7.6e-29 132.1 372 37.4
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 7.6e-29 132.1 380 35.3
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 1.7e-28 131.0 345 38.8
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 2.2e-28 130.6 321 38.0
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 3.8e-28 129.8 317 37.5
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 4.2e-27 126.3 326 37.7
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 9.3e-27 125.2 306 38.2
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 9.3e-27 125.2 378 36.5
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 9.3e-27 125.2 378 36.2
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 1.2e-26 124.8 332 36.1
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 1.2e-26 124.8 336 37.5
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 1.6e-26 124.4 316 37.0
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.6e-26 124.4 334 37.4
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 3.5e-26 123.2 354 36.2
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 7.8e-26 122.1 323 39.0
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.0e-25 121.7 376 32.4
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.0e-25 121.7 333 36.6
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 3.0e-25 120.2 302 37.4
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 5.1e-25 119.4 361 36.3
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 6.6e-25 119.0 324 38.3
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 8.7e-25 118.6 327 35.2
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.5e-24 117.9 334 35.3
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 2.5e-24 117.1 339 34.5
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.5e-24 117.1 350 35.7
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 3.3e-24 116.7 343 35.3
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.3e-24 116.7 335 36.7
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 7.3e-24 115.5 359 33.7
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 7.3e-24 115.5 318 35.2
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.3e-23 114.8 332 36.1
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 4.8e-23 112.8 344 37.8
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 8.1e-23 112.1 335 35.5
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.1e-22 111.7 334 36.2
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 4.0e-22 109.8 332 34.0
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 5.3e-22 109.4 324 35.8
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 9.0e-22 108.6 330 36.4
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.5e-21 107.8 329 35.6
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 3.4e-21 106.7 364 31.6
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.3e-20 104.8 299 35.1
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 1.4e-19 101.3 321 34.9
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 5.4e-19 99.4 347 34.0
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 5.4e-19 99.4 347 33.4
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 7.1e-19 99.0 324 33.6
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.2e-18 98.2 300 33.7
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 1.6e-18 97.8 301 33.2
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 2.7e-18 97.1 299 34.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 4.6e-18 96.3 326 33.7
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 4.6e-18 96.3 348 33.3
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 7.8e-18 95.5 356 32.3
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.3e-17 94.0 352 31.0
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 3.0e-17 93.6 321 32.7
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.1e-16 91.7 324 33.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.1e-16 91.7 338 34.3
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 2.5e-16 90.5 301 32.2
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 2.5e-16 90.5 475 28.0
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 7.3e-16 89.0 334 31.4
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 9.6e-16 88.6 190 40.0
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.6e-15 87.8 325 33.2
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 4.8e-15 86.3 323 31.9
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 8.1e-15 85.5 323 31.6
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 5.8e-13 79.3 40 95.0
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 9.9e-13 78.6 320 31.9
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 9.9e-13 78.6 39 97.4
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 4.9e-12 76.3 40 92.5
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 6.4e-12 75.9 54 74.1
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 8.4e-12 75.5 39 94.9
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 8.4e-12 75.5 39 94.9
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.4e-11 74.7 40 92.5
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 1.4e-11 74.7 39 94.9
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.9e-11 74.3 156 39.7
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 1.2e-10 71.6 39 87.2
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.6e-10 71.2 36 97.2
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 4.6e-10 69.7 327 32.7
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 7.9e-10 68.9 44 75.0
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 1.0e-09 68.6 341 32.0
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 1.0e-09 68.6 318 32.4
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.3e-09 68.2 376 28.7
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.8e-09 67.8 40 80.0
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 3.9e-09 66.6 44 72.7
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 2.5e-08 63.9 42 76.2
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 7.4e-08 62.4 92 39.1
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 6.2e-07 59.3 54 61.1
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 9.0e-06 55.5 232 30.6


User provided reference genes

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