Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.3e-230 802.0 429 100.0
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 4.8e-103 379.0 354 63.0
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.1e-95 353.6 218 84.4
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 3.0e-49 200.3 368 41.0
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 1.4e-46 191.4 382 44.8
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 2.4e-46 190.7 417 41.2
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 3.5e-45 186.8 371 38.8
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.0e-44 185.3 376 43.1
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 1.3e-44 184.9 378 43.1
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 3.8e-44 183.3 385 43.4
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 5.0e-44 183.0 329 45.6
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 2.5e-43 180.6 374 41.7
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 5.5e-43 179.5 377 41.1
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.2e-42 178.3 354 40.1
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.6e-42 177.9 353 39.7
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 2.1e-42 177.6 376 42.3
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 3.6e-42 176.8 376 36.2
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 3.4e-40 170.2 376 40.4
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 9.1e-38 162.2 338 38.2
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 9.1e-38 162.2 365 43.6
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 1.6e-37 161.4 346 41.9
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.0e-37 161.0 352 38.6
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 2.7e-37 160.6 369 41.5
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 4.5e-37 159.8 361 41.8
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 7.7e-37 159.1 353 40.5
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.7e-36 157.9 337 40.9
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 2.9e-36 157.1 296 40.2
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 5.0e-36 156.4 348 42.5
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.5e-35 154.8 346 39.6
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.5e-35 154.8 347 38.6
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.5e-35 154.1 298 40.3
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.5e-35 154.1 298 40.3
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.5e-35 154.1 298 40.3
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 2.5e-35 154.1 335 36.7
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 6.8e-33 146.0 354 40.4
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 1.5e-32 144.8 353 34.3
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 2.0e-32 144.4 355 34.4
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 2.2e-31 141.0 361 35.7
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.2e-29 135.2 351 35.9
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 3.5e-29 133.7 357 33.3
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 4.5e-29 133.3 368 32.1
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 5.9e-29 132.9 349 36.4
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 4.2e-27 126.7 390 34.9
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 4.2e-27 126.7 280 42.9
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 9.5e-27 125.6 350 32.3
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 3.6e-26 123.6 362 30.9
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 1.8e-25 121.3 362 30.7
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 3.0e-25 120.6 281 35.2
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 3.0e-25 120.6 367 30.2
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 1.2e-24 118.6 291 35.7
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 7.5e-24 115.9 384 31.8
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 2.2e-23 114.4 359 31.5
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 2.9e-23 114.0 298 34.9
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 1.8e-22 111.3 355 33.8
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 3.2e-22 110.5 350 30.6
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 3.2e-22 110.5 244 35.7
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 9.2e-22 109.0 354 33.1
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.2e-21 108.6 350 35.4
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 2.0e-21 107.8 338 31.7
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 2.0e-21 107.8 361 30.5
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 3.5e-21 107.1 342 34.2
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 7.8e-21 105.9 196 39.8
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 1.3e-20 105.1 344 31.4
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 1.7e-20 104.8 248 34.3
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 5.0e-20 103.2 308 38.0
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 3.3e-19 100.5 296 36.1
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 1.2e-18 98.6 285 33.0
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 1.2e-18 98.6 337 30.9
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.2e-18 98.6 268 35.1
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 1.6e-18 98.2 360 32.5
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 1.6e-18 98.2 232 37.9
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 5.2e-17 93.2 258 32.9
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 1.2e-16 92.0 261 31.8
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 1.5e-16 91.7 299 36.1
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 2.0e-16 91.3 288 35.8
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 2.6e-16 90.9 295 34.6
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 2.6e-16 90.9 355 32.1
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 3.4e-16 90.5 274 33.2
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 4.4e-16 90.1 321 32.1
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 7.5e-16 89.4 305 34.8
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 7.5e-16 89.4 299 35.8
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 7.5e-16 89.4 274 32.8
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 9.8e-16 89.0 274 32.8
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 1.3e-15 88.6 288 35.8
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 8.3e-15 85.9 340 30.9
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 8.3e-15 85.9 334 29.6
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 8.3e-15 85.9 373 28.4
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 1.9e-14 84.7 244 32.0
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 3.2e-14 84.0 269 30.9
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 4.1e-14 83.6 303 29.0
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 1.2e-13 82.0 274 32.8
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 1.6e-13 81.6 259 32.0
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 2.0e-13 81.3 263 34.2
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 3.5e-13 80.5 253 31.6
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 7.8e-13 79.3 322 30.7
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 1.0e-12 79.0 339 29.8
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 2.3e-12 77.8 278 36.7
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 3.9e-12 77.0 261 29.9
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 3.9e-12 77.0 255 28.2
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 1.5e-11 75.1 280 31.1
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 1.6e-10 71.6 274 28.5
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 4.7e-10 70.1 306 27.1
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 3.1e-09 67.4 259 30.1
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 4.0e-09 67.0 168 35.1
GSVIVG01038640001 Vitis vinifera HOM05D003457 ORTHO05D009249 4.9e-07 60.1 84 44.0
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 1.4e-06 58.5 244 32.4
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 5.4e-06 56.6 207 29.0


User provided reference genes

Program Settings