Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 1.3e-125 453.0 223 100.0
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 3.5e-97 358.6 214 81.8
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 4.0e-93 345.1 223 78.0
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 7.2e-87 324.3 214 73.8
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 3.4e-84 315.5 217 71.4
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 1.7e-83 313.2 213 73.2
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 8.3e-83 310.8 217 71.4
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.8e-82 309.7 218 68.8
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 4.1e-82 308.5 216 67.6
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 7.0e-82 307.8 216 69.4
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 1.6e-81 306.6 212 69.8
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 2.0e-81 306.2 211 69.2
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 4.5e-81 305.1 221 69.2
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 4.5e-81 305.1 216 67.1
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 2.2e-80 302.8 216 66.7
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 2.9e-80 302.4 213 68.1
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 8.5e-80 300.8 219 68.0
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 5.5e-79 298.1 212 70.8
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.2e-78 297.0 215 69.3
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 1.2e-78 297.0 216 69.0
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 2.1e-78 296.2 211 66.8
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 2.1e-78 296.2 212 68.9
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 2.1e-78 296.2 212 67.0
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 4.7e-78 295.0 210 70.0
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 4.7e-78 295.0 216 69.9
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 4.7e-78 295.0 219 65.3
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 6.1e-78 294.7 214 66.8
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 8.0e-78 294.3 214 67.3
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.0e-77 293.9 218 66.5
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.4e-77 293.5 215 66.0
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.4e-77 293.5 215 67.0
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 2.3e-77 292.7 213 66.7
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 3.0e-77 292.4 216 68.5
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 5.2e-77 291.6 218 66.1
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 6.8e-77 291.2 214 67.3
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 6.8e-77 291.2 211 69.2
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 8.8e-77 290.8 220 64.1
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 8.8e-77 290.8 219 65.3
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.2e-76 290.4 218 65.6
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.5e-76 290.0 218 67.4
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.5e-76 290.0 220 67.7
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 2.0e-76 289.7 214 68.7
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 2.6e-76 289.3 213 65.7
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.6e-76 289.3 211 70.1
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 2.6e-76 289.3 213 66.2
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 3.4e-76 288.9 219 62.1
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 4.4e-76 288.5 217 65.4
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 4.4e-76 288.5 211 68.2
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 7.5e-76 287.7 212 69.3
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 7.5e-76 287.7 222 66.7
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.7e-75 286.6 221 64.3
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 1.7e-75 286.6 206 67.0
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 2.8e-75 285.8 220 63.6
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.8e-75 285.8 219 65.3
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 4.9e-75 285.0 219 66.2
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 6.3e-75 284.6 215 65.6
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 6.3e-75 284.6 213 64.3
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 8.3e-75 284.3 215 67.4
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.1e-74 283.9 212 68.4
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.1e-74 283.9 218 64.2
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 1.4e-74 283.5 218 63.8
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.1e-74 282.3 212 68.4
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 4.1e-74 282.0 217 64.1
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 5.4e-74 281.6 215 63.7
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 5.4e-74 281.6 215 66.5
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 7.0e-74 281.2 216 64.8
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 7.0e-74 281.2 216 64.8
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 7.0e-74 281.2 217 60.8
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-73 280.4 215 64.7
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.2e-73 280.4 215 64.7
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.2e-73 280.4 213 67.6
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.6e-73 280.0 214 63.1
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.6e-73 280.0 212 65.6
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 2.0e-73 279.6 212 64.2
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 2.0e-73 279.6 214 64.5
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 2.0e-73 279.6 214 64.0
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 2.0e-73 279.6 219 63.5
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.7e-73 279.3 220 66.8
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 3.5e-73 278.9 217 64.5
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 4.5e-73 278.5 217 64.1
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 5.9e-73 278.1 210 66.7
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 5.9e-73 278.1 212 65.1
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 7.7e-73 277.7 216 65.7
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 1.7e-72 276.6 225 61.3
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 2.9e-72 275.8 213 60.6
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 6.6e-72 274.6 215 62.8
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 8.6e-72 274.2 221 62.4
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.1e-71 273.9 215 62.8
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.9e-71 273.1 217 60.8
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.9e-71 273.1 211 63.0
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 4.3e-71 271.9 216 63.4
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 4.3e-71 271.9 216 63.4
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 4.3e-71 271.9 217 60.8
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 4.3e-71 271.9 215 63.7
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 7.3e-71 271.2 212 61.8
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 1.6e-70 270.0 211 63.5
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 2.8e-70 269.2 223 61.0
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 6.1e-70 268.1 216 60.6
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.8e-69 266.5 212 63.2
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 5.2e-69 265.0 215 62.3
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 8.9e-69 264.2 216 60.2
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 8.9e-69 264.2 211 61.6
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.7e-67 260.0 214 60.3
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.2e-67 259.6 210 61.0
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.1e-66 257.3 268 53.7
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.1e-66 257.3 268 53.7
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 6.2e-62 241.5 210 60.0
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 8.9e-61 237.7 203 59.6
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 8.3e-59 231.1 203 56.7
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 8.6e-56 221.1 150 72.7
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 9.5e-55 217.6 223 52.0
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 5.2e-53 211.8 221 52.9
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.1e-50 204.1 208 51.4
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-49 200.7 170 60.6
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 4.6e-49 198.7 211 46.4
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.5e-41 172.6 218 43.6
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 4.6e-41 172.2 211 48.8
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.7e-40 170.2 227 47.1
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 4.3e-39 165.6 131 64.1
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 9.6e-39 164.5 238 39.9
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.8e-38 162.9 181 49.2
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 4.7e-38 162.2 214 43.5
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 4.4e-36 155.6 217 41.9
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.9e-31 140.2 166 47.0
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.4e-28 129.4 118 59.3
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 2.9e-27 126.3 120 54.2
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 1.6e-22 110.5 154 38.3
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 9.9e-20 101.3 57 75.4
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 4.9e-19 99.0 227 35.7
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.2e-17 94.4 51 78.4
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 3.9e-16 89.4 78 55.1
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 6.2e-14 82.0 148 36.5
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 6.2e-14 82.0 79 54.4
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.4e-13 80.9 104 41.3


User provided reference genes

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