Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 3.1e-287 991.1 499 100.0
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.0e-158 561.6 513 59.6
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 3.0e-157 559.3 513 59.6
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 1.6e-150 537.0 512 57.6
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 5.1e-149 531.9 513 59.3
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.7e-75 287.7 617 34.8
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.7e-75 287.7 598 35.1
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.8e-69 267.7 598 35.3
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 9.2e-66 255.4 535 38.1
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.8e-65 252.3 535 36.6
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.3e-64 251.5 531 36.5
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.3e-64 251.5 536 37.3
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 1.2e-62 245.0 587 34.4
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 6.2e-62 242.7 503 35.4
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 5.2e-61 239.6 587 34.9
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 1.2e-60 238.4 584 34.1
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.5e-60 238.0 583 34.6
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.7e-59 233.4 529 35.9
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.9e-58 231.1 582 33.0
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.4e-58 230.7 515 33.8
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 4.1e-58 229.9 510 33.3
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 2.1e-57 227.6 513 34.9
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 7.8e-57 225.7 517 34.6
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.3e-56 224.9 611 32.7
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 3.6e-54 216.9 584 30.7
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 3.6e-54 216.9 520 34.8
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 6.8e-53 212.6 516 32.9
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 1.5e-52 211.5 517 34.0
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 9.9e-52 208.8 513 32.4
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 9.3e-50 202.2 565 28.8
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.9e-47 194.5 277 43.7
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 2.8e-46 190.7 476 34.7
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 2.6e-44 184.1 519 28.7
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 2.9e-43 180.6 494 32.6
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 5.4e-42 176.4 507 32.0
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 7.9e-41 172.6 482 32.8
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.3e-40 171.0 506 29.1
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.5e-39 168.3 338 38.8
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.5e-39 168.3 508 30.3
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.5e-39 168.3 280 40.0
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.9e-39 167.9 502 30.7
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 5.6e-39 166.4 414 31.4
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 7.4e-39 166.0 508 30.1
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 7.4e-39 166.0 507 31.8
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.8e-37 161.4 448 31.2
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.6e-36 157.5 282 37.2
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 9.9e-36 155.6 519 29.5
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 3.8e-35 153.7 244 43.4
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 5.5e-34 149.8 367 33.2
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 5.5e-34 149.8 495 28.9
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 5.5e-34 149.8 495 28.7
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 2.7e-33 147.5 365 32.9
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 3.5e-33 147.1 509 28.5
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.0e-32 145.6 201 44.8
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.1e-31 142.1 552 27.9
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.1e-31 142.1 552 27.9
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.5e-31 141.7 412 29.6
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 1.9e-31 141.4 276 35.9
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 9.6e-31 139.0 301 33.6
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 9.6e-31 139.0 577 27.0
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.4e-29 135.2 414 31.4
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 2.4e-29 134.4 286 33.6
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 2.0e-28 131.3 504 27.6
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 2.2e-27 127.9 525 26.9
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 3.8e-27 127.1 436 30.0
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.4e-26 125.2 545 25.9
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 3.9e-24 117.1 415 29.4
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 7.4e-23 112.8 509 26.1
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.6e-22 111.7 301 32.2
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 4.8e-22 110.2 407 28.0
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 4.8e-22 110.2 286 31.8
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 8.2e-22 109.4 526 27.2
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 1.8e-21 108.2 277 31.8
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.8e-21 108.2 279 30.5
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.1e-21 107.5 286 31.1
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 6.9e-21 106.3 280 30.4
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 7.6e-20 102.8 276 30.1
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 2.9e-19 100.9 544 24.6
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 3.8e-19 100.5 209 37.8
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 1.4e-18 98.6 277 28.9
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 4.2e-18 97.1 542 24.7
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 5.5e-18 96.7 270 31.1
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 7.2e-18 96.3 260 30.0
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 2.1e-17 94.7 205 33.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 3.0e-16 90.9 477 25.2
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.9e-16 90.5 304 28.9
QL09p006814 Quercus lobata HOM05D006657 ORTHO05D005964 5.1e-16 90.1 86 52.3
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 1.5e-15 88.6 289 28.0
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.5e-15 88.6 516 25.4
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 1.9e-15 88.2 310 28.1
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.6e-14 85.1 331 27.8
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.6e-14 85.1 567 23.6
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 4.8e-14 83.6 332 28.0
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 4.8e-14 83.6 195 31.3
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 8.2e-14 82.8 194 30.9
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.1e-13 82.4 556 23.6
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.8e-13 81.6 344 27.9
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 4.1e-13 80.5 483 25.5
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 1.2e-12 79.0 351 26.5
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 2.0e-12 78.2 198 28.8
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.6e-12 77.8 294 26.9
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 2.6e-12 77.8 487 24.0
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 3.4e-12 77.4 351 26.5
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 3.4e-12 77.4 342 26.9
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 4.5e-12 77.0 198 29.3
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 5.9e-12 76.6 338 24.6
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 5.9e-12 76.6 343 25.1
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 1.0e-11 75.9 420 25.0
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 2.2e-11 74.7 180 31.1
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 2.9e-11 74.3 202 28.2
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 2.9e-11 74.3 202 28.2
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 6.5e-11 73.2 185 30.8
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 8.5e-11 72.8 200 28.5
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 8.5e-11 72.8 200 28.5
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 8.5e-11 72.8 200 28.5
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.4e-10 72.0 220 28.2
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 2.5e-10 71.2 341 25.5
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 2.5e-10 71.2 334 26.6
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 3.2e-10 70.9 329 24.9
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 3.2e-10 70.9 329 24.9
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 5.5e-10 70.1 330 25.5
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 1.2e-09 68.9 204 27.5
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 1.2e-09 68.9 351 27.1
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 1.2e-09 68.9 349 24.6
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 1.2e-09 68.9 351 27.1
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 2.7e-09 67.8 332 25.0
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 1.4e-08 65.5 336 26.8
QL09p006824 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-08 64.3 89 44.9
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 8.8e-08 62.8 61 52.5
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 8.8e-08 62.8 199 29.6
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.3e-07 60.8 199 29.1
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 3.3e-07 60.8 171 28.1
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 5.7e-07 60.1 68 47.1
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 5.7e-07 60.1 187 28.9
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 7.4e-07 59.7 131 32.8
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 7.4e-07 59.7 198 24.7
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 9.7e-07 59.3 65 47.7
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.2e-06 58.2 154 30.5
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 3.7e-06 57.4 191 28.3
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 4.8e-06 57.0 197 23.4
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 6.3e-06 56.6 224 28.1
Potri.004G080501 Populus trichocarpa HOM05D006657 ORTHO05D005964 8.2e-06 56.2 68 45.6


User provided reference genes

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