Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 3.4e-32 141.7 115 100.0
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 8.5e-15 84.0 102 68.6
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.4e-14 83.2 95 66.3
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 6.1e-13 77.8 105 63.8
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.0e-12 77.0 94 63.8
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 2.3e-12 75.9 102 49.0
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 3.0e-12 75.5 91 61.5
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.9e-12 75.1 101 61.4
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.5e-11 73.2 101 57.4
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.5e-11 73.2 101 60.4
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.5e-11 73.2 91 48.4
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.5e-11 72.4 108 43.5
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 4.3e-11 71.6 111 56.8
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 5.7e-11 71.2 103 45.6
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 5.7e-11 71.2 103 45.6
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 7.4e-11 70.9 92 52.2
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.4e-11 70.9 101 59.4
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 7.4e-11 70.9 101 59.4
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 7.4e-11 70.9 107 43.0
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 9.7e-11 70.5 88 59.1
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 9.7e-11 70.5 95 51.6
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 9.7e-11 70.5 102 47.1
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.3e-10 70.1 88 48.9
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 1.3e-10 70.1 102 52.0
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.3e-10 70.1 98 62.2
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.7e-10 69.7 87 52.9
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.7e-10 69.7 43 79.1
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 2.2e-10 69.3 95 63.2
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 2.2e-10 69.3 97 51.5
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.2e-10 69.3 112 41.1
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 2.8e-10 68.9 87 62.1
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 2.8e-10 68.9 93 59.1
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 3.7e-10 68.6 106 44.3
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 4.8e-10 68.2 88 47.7
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 4.8e-10 68.2 96 45.8
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.8e-10 68.2 90 48.9
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 6.3e-10 67.8 91 56.0
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 6.3e-10 67.8 102 49.0
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 6.3e-10 67.8 108 44.4
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 6.3e-10 67.8 107 48.6
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 8.2e-10 67.4 96 58.3
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 8.2e-10 67.4 102 44.1
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.1e-09 67.0 91 47.3
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.1e-09 67.0 101 44.6
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.1e-09 67.0 101 44.6
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.4e-09 66.6 92 46.7
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 1.4e-09 66.6 104 47.1
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 1.8e-09 66.2 91 46.2
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 2.4e-09 65.9 92 55.4
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 2.4e-09 65.9 92 55.4
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 2.4e-09 65.9 91 58.2
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 2.4e-09 65.9 94 44.7
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 3.1e-09 65.5 94 43.6
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 3.1e-09 65.5 100 42.0
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 3.1e-09 65.5 101 41.6
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 4.1e-09 65.1 86 50.0
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 4.1e-09 65.1 92 47.8
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 4.1e-09 65.1 101 50.5
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 5.3e-09 64.7 88 46.6
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.3e-09 64.7 92 44.6
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 5.3e-09 64.7 95 46.3
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 5.3e-09 64.7 95 52.6
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.3e-09 64.7 91 53.8
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.3e-09 64.7 91 56.0
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 6.9e-09 64.3 92 42.4
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 6.9e-09 64.3 100 58.0
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 6.9e-09 64.3 105 43.8
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 6.9e-09 64.3 87 47.1
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 9.1e-09 63.9 91 45.1
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 9.1e-09 63.9 98 42.9
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.2e-08 63.5 91 58.2
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 1.5e-08 63.2 94 44.7
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.5e-08 63.2 92 45.7
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.5e-08 63.2 91 54.9
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.5e-08 63.2 91 46.2
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 1.5e-08 63.2 86 59.3
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.5e-08 63.2 103 41.7
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.5e-08 63.2 101 42.6
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 1.5e-08 63.2 91 56.0
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 2.0e-08 62.8 96 44.8
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 2.0e-08 62.8 96 43.8
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 2.0e-08 62.8 91 56.0
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 2.6e-08 62.4 100 44.0
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.6e-08 62.4 105 57.1
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.6e-08 62.4 105 57.1
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.6e-08 62.4 89 46.1
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 2.6e-08 62.4 100 43.0
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.4e-08 62.0 89 48.3
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 4.5e-08 61.6 88 45.5
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.5e-08 61.6 101 56.4
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 4.5e-08 61.6 42 73.8
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 4.5e-08 61.6 87 43.7
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 5.9e-08 61.2 92 43.5
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.9e-08 61.2 52 59.6
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.9e-08 61.2 52 59.6
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 5.9e-08 61.2 101 40.6
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 7.7e-08 60.8 52 57.7
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 7.7e-08 60.8 52 57.7
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 7.7e-08 60.8 52 57.7
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 7.7e-08 60.8 52 57.7
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 7.7e-08 60.8 42 71.4
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 7.7e-08 60.8 50 62.0
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.7e-08 60.8 91 54.9
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 7.7e-08 60.8 42 71.4
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 7.7e-08 60.8 98 54.1
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 7.7e-08 60.8 91 58.2
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.0e-07 60.5 52 57.7
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.3e-07 60.1 50 62.0
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.3e-07 60.1 102 44.1
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.3e-07 60.1 50 60.0
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 1.3e-07 60.1 91 44.0
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 1.7e-07 59.7 43 72.1
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.7e-07 59.7 91 44.0
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.7e-07 59.7 91 44.0
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 2.2e-07 59.3 43 69.8
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-07 59.3 93 45.2
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-07 59.3 43 69.8
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-07 59.3 43 69.8
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 2.2e-07 59.3 43 69.8
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 2.2e-07 59.3 93 45.2
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 2.2e-07 59.3 43 69.8
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.2e-07 59.3 52 57.7
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 2.2e-07 59.3 99 42.4
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 2.2e-07 59.3 94 40.4
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.9e-07 58.9 99 40.4
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 3.8e-07 58.5 50 60.0
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 3.8e-07 58.5 91 42.9
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 3.8e-07 58.5 96 59.4
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 3.8e-07 58.5 90 44.4
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 5.0e-07 58.2 95 43.2
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 5.0e-07 58.2 52 55.8
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 5.0e-07 58.2 110 40.9
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 6.5e-07 57.8 42 69.0
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 6.5e-07 57.8 93 43.0
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 6.5e-07 57.8 43 65.1
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 6.5e-07 57.8 52 59.6
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 6.5e-07 57.8 98 57.1
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 6.5e-07 57.8 95 42.1
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 8.5e-07 57.4 93 41.9
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 8.5e-07 57.4 93 41.9
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 8.5e-07 57.4 93 44.1
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 8.5e-07 57.4 91 50.5
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 8.5e-07 57.4 110 40.9
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 1.1e-06 57.0 92 44.6
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.1e-06 57.0 93 43.0
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.1e-06 57.0 97 43.3
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 1.4e-06 56.6 98 37.8
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 1.4e-06 56.6 52 59.6
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.4e-06 56.6 93 39.8
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 1.9e-06 56.2 93 41.9
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 1.9e-06 56.2 93 43.0
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 1.9e-06 56.2 93 41.9
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.9e-06 56.2 102 38.2
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.9e-06 56.2 87 41.4
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.9e-06 56.2 43 67.4
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.5e-06 55.8 102 40.2
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 2.5e-06 55.8 42 64.3
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.2e-06 55.5 42 61.9
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 3.2e-06 55.5 85 55.3
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 4.2e-06 55.1 93 51.6
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.2e-06 55.1 87 41.4
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 4.2e-06 55.1 98 37.8
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 4.2e-06 55.1 92 57.6
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 7.2e-06 54.3 97 40.2
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 7.2e-06 54.3 97 40.2
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 9.4e-06 53.9 101 38.6


User provided reference genes

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