Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 4.3e-231 804.3 407 100.0
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.4e-197 692.2 407 85.5
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 9.9e-159 563.9 417 72.7
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.7e-158 563.1 412 70.6
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 6.4e-158 561.2 394 73.9
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 5.4e-157 558.1 414 70.5
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.1e-156 556.2 413 70.5
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 5.1e-155 551.6 356 75.8
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.1e-154 550.4 391 72.4
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 3.3e-154 548.9 340 79.1
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 2.1e-153 546.2 382 73.3
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.1e-153 546.2 401 69.8
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.6e-151 539.3 405 69.6
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.9e-151 537.3 405 69.4
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.7e-150 536.6 403 69.7
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 6.4e-150 534.6 351 75.5
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 6.4e-150 534.6 392 70.7
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.0e-148 528.1 403 68.2
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.7e-147 526.6 413 65.6
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.0e-147 525.8 404 68.1
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 5.1e-147 525.0 378 71.7
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.6e-147 524.6 404 68.1
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.5e-146 523.5 432 65.7
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 4.3e-146 521.9 358 77.9
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.4e-144 516.9 340 75.6
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 3.1e-144 515.8 341 74.5
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 4.0e-144 515.4 340 75.3
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 4.0e-144 515.4 412 65.3
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 6.9e-144 514.6 336 75.6
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 9.0e-144 514.2 375 68.0
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.5e-143 513.5 354 71.5
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.3e-142 510.4 396 65.4
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.3e-142 510.4 360 71.1
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 6.4e-142 508.1 388 67.5
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.4e-141 506.9 333 75.4
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 7.1e-141 504.6 385 66.2
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 9.3e-141 504.2 383 66.8
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 9.3e-141 504.2 341 71.3
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.6e-140 503.4 341 71.6
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 2.1e-140 503.1 341 71.3
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 2.1e-140 503.1 341 71.3
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 3.5e-140 502.3 341 71.0
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 3.5e-140 502.3 361 69.0
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 4.6e-140 501.9 340 73.5
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 7.9e-140 501.1 389 65.6
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 7.9e-140 501.1 406 63.5
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.8e-139 500.0 350 70.9
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 2.3e-139 499.6 408 64.7
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.0e-139 499.2 375 69.6
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 5.1e-139 498.4 360 71.4
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 8.7e-139 497.7 341 71.0
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.1e-138 497.3 338 71.6
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.1e-138 497.3 341 70.4
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.5e-138 496.1 360 71.1
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 7.4e-138 494.6 381 66.9
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 9.6e-138 494.2 393 66.2
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 9.6e-138 494.2 392 64.0
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.6e-137 493.4 396 63.6
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.1e-137 493.0 388 66.0
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 3.7e-137 492.3 370 67.8
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.7e-137 492.3 345 70.1
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.4e-136 490.3 387 64.1
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.4e-136 490.3 359 68.5
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.4e-136 490.3 401 64.6
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.4e-136 490.3 401 64.6
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.4e-136 490.3 340 73.2
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.4e-136 489.6 361 67.6
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 3.1e-136 489.2 338 68.9
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 5.3e-136 488.4 355 68.2
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.2e-135 487.3 397 64.2
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.0e-135 486.5 351 69.5
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.6e-135 486.1 351 68.9
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 3.4e-135 485.7 343 69.7
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.4e-135 485.7 351 69.2
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 3.8e-134 482.3 346 66.2
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 6.4e-134 481.5 325 70.8
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.1e-133 480.7 361 64.3
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.4e-133 480.3 325 74.5
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.4e-133 480.3 375 65.1
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 2.5e-133 479.6 392 65.1
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 5.5e-133 478.4 407 61.9
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.2e-132 477.2 338 68.3
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 3.5e-132 475.7 327 70.9
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 6.0e-132 474.9 358 64.2
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 7.9e-132 474.6 398 59.0
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.0e-131 474.2 344 68.3
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 3.9e-131 472.2 332 70.5
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 5.1e-131 471.9 332 70.2
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 5.1e-131 471.9 332 70.2
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.1e-130 470.7 329 70.5
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.9e-130 469.9 378 64.0
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 2.5e-130 469.5 332 70.2
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 5.3e-128 461.8 407 60.4
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 6.9e-128 461.5 416 57.0
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 9.0e-128 461.1 347 63.7
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 6.5e-126 454.9 421 56.1
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.1e-124 449.9 384 62.2
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 1.6e-121 440.3 349 66.8
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.1e-120 437.6 307 74.6
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 4.1e-120 435.6 305 71.1
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 5.9e-119 431.8 565 45.7
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 5.0e-118 428.7 341 60.1
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.6e-116 423.7 270 75.9
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 3.0e-115 419.5 269 74.3
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 5.1e-115 418.7 335 63.6
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.0e-114 416.8 335 60.9
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 2.2e-113 413.3 298 65.8
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 8.2e-113 411.4 272 74.3
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 2.6e-111 406.4 317 61.8
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 7.4e-106 388.3 299 63.9
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 2.4e-104 383.3 261 71.3
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 3.2e-93 346.3 340 55.3
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 3.2e-93 346.3 320 51.6
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.2e-93 345.9 356 49.2
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 6.1e-92 342.0 269 66.5
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.0e-91 339.7 357 48.2
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.8e-88 330.5 339 49.0
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.8e-88 330.5 276 62.0
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.1e-88 329.3 317 51.7
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 3.6e-84 316.2 220 65.9
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 4.7e-84 315.8 284 60.6
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 5.5e-77 292.4 173 79.8
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 5.5e-77 292.4 271 58.3
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.7e-76 289.3 260 61.9
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 9.2e-72 275.0 266 53.0
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 2.9e-70 270.0 198 69.2
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 9.8e-66 255.0 245 56.3
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.5e-63 246.5 245 52.7
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 8.6e-54 215.3 224 53.6
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 2.5e-45 187.2 117 70.9
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 4.3e-45 186.4 169 59.2
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.2e-39 168.3 341 34.3
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.1e-38 162.9 150 52.7
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 2.6e-34 150.6 93 73.1
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.2e-33 147.5 319 31.0
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.9e-32 144.4 130 61.5
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 7.3e-29 132.5 292 31.5
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 3.5e-23 113.6 97 51.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 4.9e-17 93.2 89 49.4
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 5.5e-16 89.7 81 60.5
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 8.7e-14 82.4 188 27.7
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 7.4e-13 79.3 48 77.1


User provided reference genes

Program Settings