Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G028300 Carya illinoinensis HOM05D018593 ORTHO05D127319 2.5e-56 221.9 112 100.0
CiPaw.06G028100 Carya illinoinensis HOM05D018593 ORTHO05D126916 4.3e-48 194.5 102 95.1
CiPaw.06G028000 Carya illinoinensis HOM05D018593 ORTHO05D000043 2.0e-37 159.1 92 84.8
CiPaw.06G027800 Carya illinoinensis HOM05D018593 ORTHO05D128302 3.4e-29 131.7 95 71.6
CiPaw.06G028200 Carya illinoinensis HOM05D018593 ORTHO05D127171 3.6e-26 121.7 107 63.6
CiPaw.06G028500 Carya illinoinensis HOM05D018593 ORTHO05D127193 6.5e-20 100.9 114 55.3
CiPaw.06G027700 Carya illinoinensis HOM05D018593 ORTHO05D128185 9.4e-19 97.1 81 60.5
Atru.chr12.536 Acer truncatum HOM05D000062 ORTHO05D000043 4.4e-08 61.6 90 44.4
Hma1.2p1_1888F.1_g306560 Hydrangea macrophylla HOM05D000062 ORTHO05D000043 1.7e-07 59.7 92 43.5
Cc01_g12720 Coffea canephora HOM05D000062 ORTHO05D000043 2.8e-07 58.9 92 42.4
QL01p032540 Quercus lobata HOM05D000062 ORTHO05D000043 3.7e-07 58.5 92 35.9
CiPaw.13G096200 Carya illinoinensis HOM05D000062 ORTHO05D000043 4.8e-07 58.2 99 40.4
vmacro03086 Vaccinium macrocarpon HOM05D000062 ORTHO05D000043 4.8e-07 58.2 92 42.4
Ciclev10030928m.g Citrus clementina HOM05D000062 ORTHO05D000043 6.3e-07 57.8 92 42.4
Cpa.g.sc1.398 Carica papaya HOM05D000062 ORTHO05D000043 1.1e-06 57.0 92 42.4
Haze_17050 Corylus avellana HOM05D000062 ORTHO05D000043 1.1e-06 57.0 92 42.4
Lj5g0000324 Lotus japonicus HOM05D000062 ORTHO05D000043 1.1e-06 57.0 92 41.3
Nitab4.5_0004078g0050 Nicotiana tabacum HOM05D000062 ORTHO05D000043 1.1e-06 57.0 92 41.3
Nitab4.5_0015114g0020 Nicotiana tabacum HOM05D000062 ORTHO05D000043 1.1e-06 57.0 92 41.3
Nitab4.5_0003969g0060 Nicotiana tabacum HOM05D000062 ORTHO05D000043 1.4e-06 56.6 92 41.3
Rhsim13G0084100 Rhododendron simsii HOM05D000062 ORTHO05D000043 1.4e-06 56.6 92 41.3
CSS0037205 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D000043 1.8e-06 56.2 92 39.1
CiPaw.01G285400 Carya illinoinensis HOM05D000062 ORTHO05D000043 1.8e-06 56.2 92 42.4
COL.COLO4_15012 Corchorus olitorius HOM05D000062 ORTHO05D000043 1.8e-06 56.2 92 42.4
Phvul.001G169000 Phaseolus vulgaris HOM05D000062 ORTHO05D000043 1.8e-06 56.2 92 41.3
Sabra08G0039000 Salix brachista HOM05D000062 ORTHO05D000043 1.8e-06 56.2 92 40.2
Hund04980 Selenicereus undatus HOM05D000062 ORTHO05D000043 1.8e-06 56.2 92 40.2
Sc12g0001590 Simmondsia chinensis HOM05D000062 ORTHO05D000043 2.4e-06 55.8 92 40.2
COL.COLO4_14989 Corchorus olitorius HOM05D000062 ORTHO05D000043 3.1e-06 55.5 92 41.3
Glyma.03G171100 Glycine max HOM05D000062 ORTHO05D000043 3.1e-06 55.5 92 40.2
Manes.07G114200 Manihot esculenta HOM05D000062 ORTHO05D000043 3.1e-06 55.5 92 41.3
Prupe.6G252500 Prunus persica HOM05D000062 ORTHO05D000043 3.1e-06 55.5 92 40.2
RcHm_v2.0_Chr1g0366521 Rosa chinensis HOM05D000062 ORTHO05D000043 3.1e-06 55.5 92 39.1
Sabra10G0159500 Salix brachista HOM05D000062 ORTHO05D000043 3.1e-06 55.5 92 41.3
VMungo1383G0694 Vigna mungo HOM05D000062 ORTHO05D000043 3.1e-06 55.5 92 40.2
arahy.Tifrunner.gnm1.ann1.MLH34E Arachis hypogaea HOM05D000062 ORTHO05D000043 4.1e-06 55.1 92 40.2
Dinv01580 Davidia involucrata HOM05D000062 ORTHO05D000043 4.1e-06 55.1 83 44.6
Oeu036160.1 Olea europaea HOM05D000062 ORTHO05D000043 4.1e-06 55.1 93 39.8
Rhsim03G0131600 Rhododendron simsii HOM05D000062 ORTHO05D000043 4.1e-06 55.1 92 40.2
THA.LOC104809899 Tarenaya hassleriana HOM05D000062 ORTHO05D000043 4.1e-06 55.1 92 40.2
TWI63G0313 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 4.1e-06 55.1 92 40.2
TAR369G0255 Trochodendron aralioides HOM05D000062 ORTHO05D000043 4.1e-06 55.1 92 38.0
FAN03G2252 Fragaria x ananassa HOM05D000062 ORTHO05D000043 5.4e-06 54.7 92 39.1
Lj3C970T3 Lonicera japonica HOM05D000062 ORTHO05D000043 5.4e-06 54.7 92 40.2
Psat3g049640 Pisum sativum HOM05D000062 ORTHO05D000043 5.4e-06 54.7 87 41.4
Psat3g183720 Pisum sativum HOM05D000062 ORTHO05D000043 5.4e-06 54.7 92 41.3
Thecc.10G044000 Theobroma cacao HOM05D000062 ORTHO05D000043 5.4e-06 54.7 92 41.3
TWI75G1183 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 5.4e-06 54.7 92 41.3
unitig_8.g4057 Utricularia gibba HOM05D000062 ORTHO05D000043 5.4e-06 54.7 92 40.2
arahy.Tifrunner.gnm1.ann1.MDA3K5 Arachis hypogaea HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 40.2
CSS0044699 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
COL.COLO4_18486 Corchorus olitorius HOM05D000062 ORTHO05D000043 7.0e-06 54.3 83 44.6
Duzib114G0263 Durio zibethinus HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 41.3
FvH4_7g22130 Fragaria vesca HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
FAN01G0477 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
FAN06G4420 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
FAN06G4908 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
MBI14_g11695_MAGBIO Magnolia biondii HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
Manes.10G032000 Manihot esculenta HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 41.3
Oeu005887.1 Olea europaea HOM05D000062 ORTHO05D000043 7.0e-06 54.3 93 38.7
Sed0004249 Sechium edule HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
Solyc09g010630.3 Solanum lycopersicum HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
Sopen09g005340 Solanum pennellii HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
PGSC0003DMG400008917 Solanum tuberosum HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
TWI38G0521 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 7.0e-06 54.3 92 39.1
Aa31LG11G7660 Aethionema arabicum HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 39.1
MSTRG.10266 Avicennia marina HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
BcaB04g21061 Brassica carinata HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
BcaB04g21064 Brassica carinata HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 9.1e-06 53.9 92 40.2
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 9.1e-06 53.9 92 40.2
BNapus_Darmor_BZH_scaffold_149p00100 Brassica napus HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
C01p52600 Brassica napus HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 9.1e-06 53.9 92 40.2
BolC1t05199H Brassica oleracea HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
BolC3t16847H Brassica oleracea HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
BraA01t04126Z Brassica rapa HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
CARHR087080 Cardamine hirsuta HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
Ca_07255_v3 Cicer arietinum L. HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
Cc02_g08040 Coffea canephora HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 41.3
Dinv37188 Davidia involucrata HOM05D000062 ORTHO05D000043 9.1e-06 53.9 83 43.4
Medtr7g024390 Medicago truncatula HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
QL01p032529 Quercus lobata HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 40.2
TWI15G1077 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 9.1e-06 53.9 92 41.3


User provided reference genes

Program Settings