Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G027700 Carya illinoinensis HOM05D018593 ORTHO05D128185 6.4e-96 354.0 168 100.0
CiPaw.06G028200 Carya illinoinensis HOM05D018593 ORTHO05D127171 1.3e-19 100.5 80 61.2
CiPaw.06G028300 Carya illinoinensis HOM05D018593 ORTHO05D127319 2.2e-19 99.8 81 60.5
CiPaw.06G028000 Carya illinoinensis HOM05D018593 ORTHO05D000043 4.9e-19 98.6 89 55.1
CiPaw.06G028100 Carya illinoinensis HOM05D018593 ORTHO05D126916 6.3e-19 98.2 89 55.1
CiPaw.06G028500 Carya illinoinensis HOM05D018593 ORTHO05D127193 8.6e-16 87.8 81 55.6
CiPaw.06G027800 Carya illinoinensis HOM05D018593 ORTHO05D128302 2.3e-13 79.7 81 48.1
Haze_17062 Corylus avellana HOM05D000062 ORTHO05D000043 1.5e-07 60.5 82 42.7
Haze_17059 Corylus avellana HOM05D000062 ORTHO05D000043 1.9e-07 60.1 84 39.3
Duzib128G1989 Durio zibethinus HOM05D000062 ORTHO05D000043 5.6e-07 58.5 82 42.7
TWI38G0521 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 5.6e-07 58.5 82 41.5
Atru.chr12.471 Acer truncatum HOM05D000062 ORTHO05D000043 7.3e-07 58.2 82 41.5
Atru.chr12.492 Acer truncatum HOM05D000062 ORTHO05D000043 7.3e-07 58.2 82 41.5
Ciclev10030928m.g Citrus clementina HOM05D000062 ORTHO05D000043 7.3e-07 58.2 82 41.5
THA.LOC104827323 Tarenaya hassleriana HOM05D000062 ORTHO05D000043 7.3e-07 58.2 82 41.5
Haze_17050 Corylus avellana HOM05D000062 ORTHO05D000043 9.5e-07 57.8 82 41.5
Lj5g0000324 Lotus japonicus HOM05D000062 ORTHO05D000043 9.5e-07 57.8 82 40.2
Phvul.001G169000 Phaseolus vulgaris HOM05D000062 ORTHO05D000043 9.5e-07 57.8 82 41.5
Glyma.03G171100 Glycine max HOM05D000062 ORTHO05D000043 1.2e-06 57.4 82 40.2
Psat3g049640 Pisum sativum HOM05D000062 ORTHO05D000043 1.2e-06 57.4 82 40.2
Thecc.05G041900 Theobroma cacao HOM05D000062 ORTHO05D000043 1.2e-06 57.4 82 41.5
TAR623G0261 Trochodendron aralioides HOM05D000062 ORTHO05D000043 1.2e-06 57.4 82 39.0
VMungo0720G1778 Vigna mungo HOM05D000062 ORTHO05D000043 1.2e-06 57.4 82 40.2
CiPaw.01G285400 Carya illinoinensis HOM05D000062 ORTHO05D000043 1.6e-06 57.0 82 40.2
Ciclev10011260m.g Citrus clementina HOM05D000062 ORTHO05D000043 1.6e-06 57.0 82 41.5
Dinv35620 Davidia involucrata HOM05D000062 ORTHO05D000043 1.6e-06 57.0 82 41.5
Dinv37188 Davidia involucrata HOM05D000062 ORTHO05D000043 1.6e-06 57.0 82 40.2
Gohir.A06G177000 Gossypium hirsutum HOM05D000062 ORTHO05D000043 1.6e-06 57.0 82 41.5
HPP92_012586 Vanilla planifolia HOM05D000062 ORTHO05D000043 1.6e-06 57.0 82 41.5
arahy.Tifrunner.gnm1.ann1.MLH34E Arachis hypogaea HOM05D000062 ORTHO05D000043 2.1e-06 56.6 82 40.2
COL.COLO4_14829 Corchorus olitorius HOM05D000062 ORTHO05D000043 2.1e-06 56.6 82 41.5
COL.COLO4_18486 Corchorus olitorius HOM05D000062 ORTHO05D000043 2.1e-06 56.6 82 40.2
Duzib114G0010 Durio zibethinus HOM05D000062 ORTHO05D000043 2.1e-06 56.6 82 41.5
VMungo1383G0694 Vigna mungo HOM05D000062 ORTHO05D000043 2.1e-06 56.6 82 40.2
Aa31LG11G7660 Aethionema arabicum HOM05D000062 ORTHO05D000043 2.8e-06 56.2 78 42.3
Aqoxy2G02081 Aquilegia oxysepala HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 39.0
arahy.Tifrunner.gnm1.ann1.MDA3K5 Arachis hypogaea HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 40.2
ClCG09G020000 Citrullus lanatus HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 40.2
Haze_20762 Corylus avellana HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 40.2
MELO3C021658.2 Cucumis melo HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 40.2
CsaV3_5G026450 Cucumis sativus L. HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 40.2
Glyma.13G130900 Glycine max HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 39.0
Gohir.D06G173000 Gossypium hirsutum HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 40.2
Gorai.010G202100 Gossypium raimondii HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 40.2
Sed0003490 Sechium edule HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 39.0
Sed0004249 Sechium edule HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 39.0
TWI15G1077 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 40.2
vmacro20137 Vaccinium macrocarpon HOM05D000062 ORTHO05D000043 2.8e-06 56.2 82 39.0
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 3.6e-06 55.8 78 43.6
BolC3t16847H Brassica oleracea HOM05D000062 ORTHO05D000043 3.6e-06 55.8 78 43.6
Cpa.g.sc1.398 Carica papaya HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 41.5
CiPaw.10G143900 Carya illinoinensis HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
ClCG04G008300 Citrullus lanatus HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
Haze_17063 Corylus avellana HOM05D000062 ORTHO05D022464 3.6e-06 55.8 79 43.0
MELO3C003119.2 Cucumis melo HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
CsaV3_4G024840 Cucumis sativus L. HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
Duzib106G0800 Durio zibethinus HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
Glyma.19G172200 Glycine max HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 39.0
Hma1.2p1_1888F.1_g306560 Hydrangea macrophylla HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 39.0
Lalb_Chr21g0314251 Lupinus albus HOM05D000062 ORTHO05D000043 3.6e-06 55.8 79 41.8
MBI14_g31249_MAGBIO Magnolia biondii HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 37.8
Potri.010G206600 Populus trichocarpa HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
Prupe.6G079800 Prunus persica HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
QL07p031206 Quercus lobata HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
QL07p047945 Quercus lobata HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
RcHm_v2.0_Chr1g0366521 Rosa chinensis HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 37.8
Hund04980 Selenicereus undatus HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 39.0
Sc20g0004770 Simmondsia chinensis HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 40.2
TAR633G1198 Trochodendron aralioides HOM05D000062 ORTHO05D000043 3.6e-06 55.8 82 37.8
BcaB04g21061 Brassica carinata HOM05D000062 ORTHO05D000043 4.7e-06 55.5 78 42.3
BcaB04g21064 Brassica carinata HOM05D000062 ORTHO05D000043 4.7e-06 55.5 78 42.3
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 4.7e-06 55.5 78 42.3
BNapus_Darmor_BZH_scaffold_149p00100 Brassica napus HOM05D000062 ORTHO05D000043 4.7e-06 55.5 78 42.3
C01p52600 Brassica napus HOM05D000062 ORTHO05D000043 4.7e-06 55.5 78 42.3
BolC1t05199H Brassica oleracea HOM05D000062 ORTHO05D000043 4.7e-06 55.5 78 42.3
BraA01t04126Z Brassica rapa HOM05D000062 ORTHO05D000043 4.7e-06 55.5 78 42.3
CSS0018653 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 39.0
Cpa.g.sc260.3 Carica papaya HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 40.2
Cc01_g12720 Coffea canephora HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 40.2
COL.COLO4_15012 Corchorus olitorius HOM05D000062 ORTHO05D000043 4.7e-06 55.5 78 42.3
MELO3C021648.2 Cucumis melo HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 37.8
Gohir.A03G041100 Gossypium hirsutum HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 39.0
Gohir.D03G127000 Gossypium hirsutum HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 39.0
Gorai.003G133400 Gossypium raimondii HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 39.0
Manes.07G114200 Manihot esculenta HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 40.2
Potri.008G054000 Populus trichocarpa HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 40.2
QL08p059162 Quercus lobata HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 40.2
Sabra10G0159500 Salix brachista HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 40.2
Sc12g0001590 Simmondsia chinensis HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 39.0
TWI53G1301 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 4.7e-06 55.5 82 39.0
CsaV3_5G026520 Cucumis sativus L. HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 37.8
Dinv01577 Davidia involucrata HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 39.0
Dinv01580 Davidia involucrata HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 40.2
Duzib106G2063 Durio zibethinus HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 40.2
Gohir.A10G216600 Gossypium hirsutum HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 40.2
MBI05_g06547_MAGBIO Magnolia biondii HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 37.8
MD17G1225700 Malus domestica HOM05D000062 ORTHO05D000043 6.2e-06 55.1 78 42.3
Nitab4.5_0001190g0040 Nicotiana tabacum HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 40.2
Peaxi162Scf00165g01810 Petunia axillaris HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 40.2
Prupe.6G252500 Prunus persica HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 39.0
PGR031G3064 Punica granatum HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 37.8
PGR037G0001 Punica granatum HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 37.8
SalBow6G1654 Salvia bowleyana HOM05D000062 ORTHO05D000043 6.2e-06 55.1 79 41.8
Sed0013298 Sechium edule HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 39.0
Thecc.10G044000 Theobroma cacao HOM05D000062 ORTHO05D000043 6.2e-06 55.1 78 42.3
TWI38G0847 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 6.2e-06 55.1 82 39.0
vmacro03086 Vaccinium macrocarpon HOM05D000062 ORTHO05D000043 6.2e-06 55.1 79 41.8
AT3G12580 Arabidopsis thaliana HOM05D000062 ORTHO05D000043 8.0e-06 54.7 78 42.3
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 8.0e-06 54.7 78 42.3
C04p60700 Brassica napus HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
BolC4t27559H Brassica oleracea HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
CSS0016385 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
CARHR087080 Cardamine hirsuta HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
Haze_13158 Corylus avellana HOM05D000062 ORTHO05D000043 8.0e-06 54.7 86 43.0
Thhalv10020257m.g Eutrema salsugineum HOM05D000062 ORTHO05D000043 8.0e-06 54.7 78 42.3
FAN03G2252 Fragaria x ananassa HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 36.6
Gohir.A01G223300 Gossypium hirsutum HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 40.2
Gorai.007G375600 Gossypium raimondii HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 40.2
MBI05_g22900_MAGBIO Magnolia biondii HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 36.6
Manes.10G031400 Manihot esculenta HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
PSO339G2165 Papaver somniferum HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
PSO384G4255 Papaver somniferum HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
PSO648G0028 Papaver somniferum HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
PSO648G0115 Papaver somniferum HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
PSO648G0128 Papaver somniferum HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
Prupe.3G102200 Prunus persica HOM05D000062 ORTHO05D000043 8.0e-06 54.7 78 41.0
Prupe.3G102300 Prunus persica HOM05D000062 ORTHO05D000043 8.0e-06 54.7 78 41.0
Sabra08G0039000 Salix brachista HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
SMO174G0223 Selaginella moellendorffii HOM05D000062 ORTHO05D000043 8.0e-06 54.7 78 39.7
Sc01g0001790 Simmondsia chinensis HOM05D000062 ORTHO05D000043 8.0e-06 54.7 80 37.5
THA.LOC104809899 Tarenaya hassleriana HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
Thecc.10G044800 Theobroma cacao HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 40.2
TWI15G0130 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0
TWI63G0313 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 8.0e-06 54.7 82 39.0


User provided reference genes

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