Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 2.0e-46 188.7 96 100.0
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 2.0e-41 172.2 96 88.5
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.3e-37 158.7 96 82.3
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 5.6e-36 154.1 95 83.2
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 9.5e-36 153.3 96 78.1
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 1.2e-35 152.9 98 80.6
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 3.6e-35 151.4 96 79.2
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 6.1e-35 150.6 100 78.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 6.1e-35 150.6 100 78.0
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 6.1e-35 150.6 96 76.0
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 8.0e-35 150.2 98 78.6
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 8.0e-35 150.2 96 76.0
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 8.0e-35 150.2 96 76.0
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 8.0e-35 150.2 96 78.1
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 8.0e-35 150.2 96 77.1
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 1.0e-34 149.8 97 78.4
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.0e-34 149.8 96 76.0
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 1.4e-34 149.4 96 75.0
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.4e-34 149.4 96 75.0
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 2.3e-34 148.7 100 75.0
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 3.1e-34 148.3 96 75.0
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 5.2e-34 147.5 98 76.5
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 2.0e-33 145.6 100 78.0
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 2.6e-33 145.2 97 75.3
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 3.4e-33 144.8 100 75.0
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 4.4e-33 144.4 96 75.0
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 4.4e-33 144.4 96 72.9
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 9.8e-33 143.3 98 76.5
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.3e-32 142.9 97 73.2
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 1.3e-32 142.9 96 74.0
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 2.9e-32 141.7 97 74.2
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 2.9e-32 141.7 96 74.0
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.9e-32 141.7 100 75.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.9e-32 141.7 100 75.0
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 3.7e-32 141.4 100 74.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 4.9e-32 141.0 100 74.0
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 6.4e-32 140.6 97 73.2
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 75.3
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 75.3
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 75.3
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 75.3
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 75.3
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 73.2
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 74.2
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 8.3e-32 140.2 100 75.0
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 75.3
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 74.2
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 74.2
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 74.2
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 74.2
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 74.2
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 74.2
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 74.2
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 74.2
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 73.2
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 1.9e-31 139.0 100 73.0
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 2.4e-31 138.7 97 73.2
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 2.4e-31 138.7 99 74.7
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 2.4e-31 138.7 97 73.2
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 3.2e-31 138.3 97 73.2
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 3.2e-31 138.3 97 73.2
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 3.2e-31 138.3 96 69.8
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 3.2e-31 138.3 100 73.0
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 3.2e-31 138.3 97 74.2
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 4.1e-31 137.9 97 73.2
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 4.1e-31 137.9 98 75.5
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 4.1e-31 137.9 100 71.0
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 5.4e-31 137.5 97 73.2
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 7.0e-31 137.1 97 73.2
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 9.2e-31 136.7 98 71.4
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 9.2e-31 136.7 97 72.2
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 9.2e-31 136.7 99 69.7
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 9.2e-31 136.7 97 71.1
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 1.6e-30 136.0 102 73.5
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.0e-30 135.6 97 71.1
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 2.7e-30 135.2 97 68.0
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 2.7e-30 135.2 96 72.9
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 73.7
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 4.6e-30 134.4 98 74.5
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 4.6e-30 134.4 98 70.4
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 4.6e-30 134.4 98 70.4
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 6.0e-30 134.0 98 73.5
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 6.0e-30 134.0 98 73.5
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 7.8e-30 133.7 98 73.5
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 7.8e-30 133.7 99 68.7
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 7.8e-30 133.7 97 72.2
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 7.8e-30 133.7 97 72.2
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.0e-29 133.3 98 72.4
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.3e-29 132.9 97 69.1
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 1.3e-29 132.9 98 73.5
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 1.3e-29 132.9 94 71.3
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 1.7e-29 132.5 98 71.4
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 2.3e-29 132.1 95 68.4
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.0e-29 131.7 97 73.2
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.0e-29 131.7 94 74.5
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.9e-29 131.3 98 71.4
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 5.0e-29 131.0 99 66.7
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 6.6e-29 130.6 102 69.6
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 8.6e-29 130.2 98 67.3
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.1e-28 129.8 100 66.0
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.1e-28 129.8 98 67.3
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.1e-28 129.8 98 67.3
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.5e-28 129.4 100 71.0
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 1.5e-28 129.4 98 67.3
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 1.5e-28 129.4 98 67.3
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 4.3e-28 127.9 98 68.4
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 4.3e-28 127.9 98 68.4
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 4.3e-28 127.9 96 67.7
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 4.3e-28 127.9 96 67.7
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 7.3e-28 127.1 99 67.7
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 7.3e-28 127.1 96 68.8
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 9.5e-28 126.7 101 65.3
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 9.5e-28 126.7 98 66.3
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 9.5e-28 126.7 121 57.9
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.2e-27 126.3 98 65.3
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 1.6e-27 125.9 104 67.3
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 1.6e-27 125.9 98 65.3
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 1.6e-27 125.9 98 66.3
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 2.1e-27 125.6 98 69.4
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 2.1e-27 125.6 107 61.7
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 8.0e-27 123.6 103 68.0
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 8.0e-27 123.6 124 60.5
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 1.1e-26 123.2 98 67.3
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 4.0e-26 121.3 102 66.7
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 5.2e-26 120.9 91 67.0
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-25 119.8 83 68.7
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-25 119.8 83 68.7
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-25 119.8 83 68.7
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.2e-25 119.8 97 64.9
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.5e-25 119.4 83 68.7
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.5e-25 119.4 88 64.8
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-25 119.4 74 81.1
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 2.6e-25 118.6 88 62.5
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 3.4e-25 118.2 69 84.1
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 5.8e-25 117.5 95 65.3
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 7.5e-25 117.1 97 64.9
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 1.3e-24 116.3 100 64.0
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.2e-24 115.5 89 64.0
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 3.7e-24 114.8 97 63.9
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 4.9e-24 114.4 107 58.9
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.1e-23 113.2 74 78.4
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 1.4e-23 112.8 76 75.0
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 1.9e-23 112.5 93 60.2
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 4.6e-22 107.8 97 60.8
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 3.0e-21 105.1 95 56.8
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 1.1e-20 103.2 74 71.6
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 4.7e-19 97.8 59 76.3
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.1e-18 96.7 63 77.8
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 2.3e-18 95.5 82 62.2
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 5.2e-18 94.4 85 57.6
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 1.5e-17 92.8 86 54.7
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 4.4e-09 64.7 78 47.4
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 7.6e-09 63.9 88 42.0
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 2.2e-08 62.4 88 46.6
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 4.6e-06 54.7 84 39.3
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 6.0e-06 54.3 52 50.0


User provided reference genes

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