Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.7e-156 555.4 312 100.0
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.7e-46 190.7 303 49.5
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.9e-40 170.6 263 46.0
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 4.3e-37 159.5 268 42.2
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 7.3e-37 158.7 299 39.5
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 9.6e-37 158.3 299 39.5
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 1.6e-36 157.5 299 39.1
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 2.8e-36 156.8 227 46.7
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 3.6e-36 156.4 140 60.7
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 7.6e-34 148.7 327 38.8
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.3e-33 147.9 180 48.3
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-33 147.9 180 48.3
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 2.9e-33 146.7 269 39.4
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.8e-33 146.4 179 48.6
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 4.9e-33 146.0 181 46.4
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.9e-33 146.0 307 37.5
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.4e-33 145.6 181 47.5
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.4e-33 145.6 316 38.9
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 8.4e-33 145.2 323 39.6
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 2.4e-32 143.7 178 47.8
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.2e-32 142.9 141 55.3
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 4.2e-32 142.9 140 55.0
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.2e-31 141.4 190 47.4
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.1e-31 140.6 146 53.4
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.5e-31 139.8 180 46.7
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 4.6e-31 139.4 285 36.8
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 6.0e-31 139.0 135 56.3
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 6.0e-31 139.0 183 48.1
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 6.0e-31 139.0 206 44.7
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 6.0e-31 139.0 206 44.7
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 6.0e-31 139.0 146 53.4
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 7.9e-31 138.7 135 54.8
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 7.9e-31 138.7 131 58.8
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.9e-31 138.7 197 45.2
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.0e-30 138.3 135 54.1
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.8e-30 137.5 135 56.3
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 3.0e-30 136.7 197 44.7
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.9e-30 136.3 141 53.9
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.9e-30 136.3 211 44.1
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.1e-29 134.8 131 56.5
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 1.1e-29 134.8 146 52.7
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.5e-29 134.4 169 48.5
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.5e-29 134.4 188 45.2
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.5e-29 134.4 188 45.2
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.5e-29 134.4 129 57.4
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 4.3e-29 132.9 134 53.0
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 5.6e-29 132.5 138 50.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.3e-28 131.3 138 55.1
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 2.1e-28 130.6 133 51.9
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.8e-28 130.2 135 48.1
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 3.7e-28 129.8 137 55.5
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 6.2e-28 129.0 165 47.3
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 8.1e-28 128.6 133 51.1
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 8.1e-28 128.6 194 45.9
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 8.1e-28 128.6 181 43.1
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.4e-27 127.9 155 45.2
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.8e-27 127.5 140 50.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 4.0e-27 126.3 129 52.7
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.2e-26 124.8 253 36.4
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 3.4e-26 123.2 140 49.3
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 4.5e-26 122.9 139 49.6
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 4.5e-26 122.9 75 77.3
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 5.8e-26 122.5 132 50.8
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 9.9e-26 121.7 139 49.6
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 3.8e-25 119.8 125 52.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 8.4e-25 118.6 121 49.6
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.1e-24 118.2 65 84.6
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.4e-24 117.9 126 45.2
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 4.2e-24 116.3 196 43.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.5e-24 115.9 131 51.1
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.5e-24 115.9 131 51.1
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.1e-24 115.5 131 50.4
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 9.3e-24 115.2 282 33.7
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.2e-23 114.8 193 36.8
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.6e-23 114.4 130 46.2
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.1e-23 114.0 184 39.7
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.1e-23 114.0 194 39.2
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.7e-23 113.6 70 72.9
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 3.5e-23 113.2 130 45.4
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.0e-22 111.7 194 38.7
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.0e-22 111.7 194 38.7
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-22 111.7 151 45.0
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-22 111.3 183 38.8
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.3e-22 111.3 130 46.9
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.0e-22 110.2 128 43.8
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 3.0e-22 110.2 181 37.0
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 5.1e-22 109.4 130 47.7
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.7e-22 109.0 127 48.8
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.7e-22 109.0 127 48.8
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.5e-21 107.8 98 56.1
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.9e-21 107.5 128 49.2
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 9.6e-21 105.1 65 69.2
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.6e-20 104.4 71 66.2
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.8e-20 103.6 96 53.1
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.8e-20 103.6 201 35.3
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 3.7e-20 103.2 132 44.7
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.2e-20 102.4 128 46.1
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 6.2e-20 102.4 81 60.5
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.4e-19 101.3 161 41.0
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.8e-19 100.9 66 68.2
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.8e-19 100.9 66 68.2
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.4e-19 100.5 132 46.2
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.3e-19 99.4 123 47.2
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 6.9e-19 99.0 122 47.5
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 6.9e-19 99.0 126 45.2
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.2e-18 98.2 162 42.0
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.2e-18 98.2 123 46.3
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 1.2e-18 98.2 171 38.0
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.0e-18 97.4 132 42.4
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.0e-18 97.4 126 44.4
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 3.4e-18 96.7 130 43.8
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 5.8e-18 95.9 129 41.9
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 7.6e-18 95.5 152 37.5
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 6.5e-17 92.4 97 49.5
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 6.5e-17 92.4 65 64.6
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 6.5e-17 92.4 129 41.1
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.4e-16 91.3 118 41.5
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.9e-16 90.9 160 40.0
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 2.5e-16 90.5 76 56.6
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 3.2e-16 90.1 185 34.6
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 4.2e-16 89.7 123 43.1
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 5.5e-16 89.4 125 44.0
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 7.1e-16 89.0 77 51.9
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 1.6e-15 87.8 183 44.3
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 7.9e-15 85.5 134 41.0
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 1.0e-14 85.1 103 48.5
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 3.0e-14 83.6 134 38.8
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 3.9e-14 83.2 181 34.8
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 6.7e-14 82.4 103 48.5
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 6.7e-14 82.4 103 48.5
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 6.7e-14 82.4 125 37.6
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 1.5e-13 81.3 103 48.5
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.3e-13 80.1 124 41.1
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 4.3e-13 79.7 195 32.3
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 9.7e-13 78.6 52 71.2
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 1.3e-12 78.2 116 43.1
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 1.3e-12 78.2 116 43.1
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 4.8e-12 76.3 64 60.9
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 6.3e-12 75.9 209 31.1
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 1.4e-11 74.7 48 66.7
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.4e-11 74.7 125 39.2
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.1e-11 73.6 64 54.7
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.5e-10 71.2 141 37.6
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 2.0e-10 70.9 115 39.1
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 3.4e-10 70.1 142 33.8
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 4.5e-10 69.7 83 47.0
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 5.0e-09 66.2 138 34.8
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 8.5e-09 65.5 86 45.3
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 1.4e-08 64.7 68 48.5
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.5e-08 63.9 128 35.2
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 2.5e-08 63.9 81 46.9
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 1.6e-07 61.2 43 58.1
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 2.1e-07 60.8 119 31.9
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 2.7e-07 60.5 42 64.3
ECA232G0105 Erigeron canadensis HOM05D004520 ORTHO05D005520 3.6e-07 60.1 115 36.5
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 6.1e-07 59.3 119 37.8
Medtr3g073650 Medicago truncatula HOM05D016564 ORTHO05D019006 1.0e-06 58.5 139 34.5
TPR.G28946 Trifolium pratense HOM05D016564 ORTHO05D019006 2.3e-06 57.4 75 44.0
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 2.3e-06 57.4 69 40.6
CAN.G689.16 Capsicum annuum HOM05D004520 ORTHO05D005520 3.0e-06 57.0 73 45.2
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 3.0e-06 57.0 204 24.5
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 5.1e-06 56.2 149 32.2
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 5.1e-06 56.2 70 41.4


User provided reference genes

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