Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.1e-162 576.6 295 100.0
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.0e-136 490.3 302 84.4
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.5e-127 459.9 300 80.3
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.6e-126 456.4 290 79.7
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.6e-126 456.4 290 79.7
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.6e-126 456.4 290 80.3
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 3.0e-125 452.2 297 79.8
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 4.4e-124 448.4 314 77.1
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.2e-121 440.3 299 75.3
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 2.7e-121 439.1 304 77.0
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.7e-121 439.1 304 77.0
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.7e-120 436.4 301 74.4
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.3e-119 432.2 277 79.1
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 5.5e-119 431.4 298 75.5
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 7.2e-119 431.0 304 75.3
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.2e-118 430.3 283 78.1
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.6e-118 429.9 285 76.8
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 2.1e-118 429.5 292 76.4
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 4.7e-118 428.3 287 76.7
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 4.7e-118 428.3 292 75.7
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 6.1e-118 427.9 298 75.2
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.8e-117 426.4 279 77.1
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.8e-117 426.4 291 75.3
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.8e-117 426.4 301 74.1
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 8.9e-117 424.1 276 80.1
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.5e-116 423.3 295 73.6
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 3.4e-116 422.2 333 69.4
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 4.4e-116 421.8 301 72.1
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 7.5e-116 421.0 281 76.2
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 2.2e-115 419.5 297 73.4
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 2.8e-115 419.1 295 73.2
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.1e-114 417.2 275 77.1
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 5.4e-114 414.8 298 73.2
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 9.2e-114 414.1 291 74.6
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.2e-114 414.1 291 74.6
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 2.0e-113 412.9 305 72.8
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 2.0e-113 412.9 270 78.1
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.5e-113 412.1 291 74.2
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.9e-113 411.4 289 74.0
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 7.8e-113 411.0 329 68.4
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.3e-112 410.2 304 71.7
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.7e-112 409.8 297 71.0
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.7e-112 409.8 299 71.2
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.7e-112 409.8 300 71.0
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 2.3e-112 409.5 295 71.9
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 2.9e-112 409.1 300 71.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 3.8e-112 408.7 299 70.9
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 6.6e-112 407.9 301 72.8
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 6.6e-112 407.9 272 77.6
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.9e-111 406.4 275 76.4
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 4.3e-111 405.2 302 69.9
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 5.6e-111 404.8 295 70.2
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.6e-111 404.8 278 75.5
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 7.3e-111 404.4 303 71.6
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 7.3e-111 404.4 303 71.3
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.2e-110 403.7 271 75.3
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.2e-110 403.7 271 75.3
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.2e-110 403.7 293 72.7
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.6e-110 403.3 300 70.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.6e-110 403.3 300 70.0
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 1.6e-110 403.3 249 81.1
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 2.1e-110 402.9 297 72.4
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 3.6e-110 402.1 299 69.9
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 3.6e-110 402.1 300 70.3
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.7e-110 401.7 271 74.2
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 4.7e-110 401.7 274 74.1
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 4.7e-110 401.7 304 68.8
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 4.7e-110 401.7 304 68.8
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 4.7e-110 401.7 293 72.4
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 1.0e-109 400.6 274 73.7
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.8e-109 399.8 301 70.4
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.3e-109 399.4 311 69.1
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 2.3e-109 399.4 288 74.3
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 2.3e-109 399.4 288 74.3
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 4.0e-109 398.7 301 71.4
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.2e-109 398.3 258 77.1
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 1.5e-108 396.7 273 73.6
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 3.4e-108 395.6 297 69.7
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 3.4e-108 395.6 248 78.2
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.1e-106 390.6 304 68.4
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.1e-106 390.6 316 66.8
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.9e-106 389.8 293 70.3
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.4e-106 389.4 249 75.9
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 2.4e-106 389.4 273 74.7
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 3.2e-106 389.0 276 73.9
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 6.0e-105 384.8 264 73.1
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 7.8e-105 384.4 291 69.4
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 1.3e-104 383.6 292 69.2
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 2.3e-104 382.9 261 73.6
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 3.0e-104 382.5 254 75.6
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 6.6e-104 381.3 267 73.8
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 6.6e-104 381.3 307 68.7
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 4.3e-103 378.6 235 78.3
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 5.6e-103 378.3 269 72.5
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 9.5e-103 377.5 280 70.4
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.6e-102 376.7 287 70.7
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 3.6e-102 375.6 309 67.3
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 4.7e-102 375.2 281 70.1
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 8.0e-102 374.4 279 70.3
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 3.1e-101 372.5 302 67.5
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 3.4e-100 369.0 288 66.7
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 2.4e-98 362.8 287 67.2
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 5.4e-98 361.7 292 65.8
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.1e-97 359.8 297 63.0
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 2.1e-97 359.8 295 64.4
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 4.6e-97 358.6 299 61.5
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 7.8e-97 357.8 269 68.0
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.0e-96 357.5 296 63.9
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.3e-96 357.1 235 74.0
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 1.3e-96 357.1 251 73.3
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 6.4e-91 338.2 301 62.1
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.2e-89 334.0 298 61.7
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 2.1e-89 333.2 253 69.6
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 6.0e-89 331.6 254 66.5
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.8e-86 322.8 298 61.1
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.1e-85 320.9 234 69.2
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 8.9e-85 317.8 254 61.8
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.2e-84 317.4 280 61.4
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 2.7e-81 306.2 210 75.2
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 3.4e-76 289.3 298 55.0
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.4e-76 289.3 295 54.6
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.7e-75 287.0 268 56.3
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.8e-75 285.8 300 51.3
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 2.7e-73 279.6 240 57.9
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 3.5e-73 279.3 319 50.5
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 4.6e-73 278.9 289 55.7
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 8.7e-72 274.6 175 79.4
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.7e-67 260.4 194 68.0
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 6.0e-65 251.9 142 87.3
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.3e-64 250.0 213 60.1
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 2.5e-63 246.5 251 54.2
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 3.1e-61 239.6 142 82.4
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.2e-60 237.7 142 80.3
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.7e-51 207.2 182 60.4
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 3.8e-51 206.1 114 89.5
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 9.3e-50 201.4 127 78.0
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 6.7e-48 195.3 159 62.3
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 2.2e-46 190.3 135 73.3
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.8e-45 187.2 274 41.6
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.9e-45 185.3 221 50.7
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.4e-44 183.0 242 47.1
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 2.2e-35 153.7 257 39.7
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 9.4e-34 148.3 278 38.1
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.8e-30 136.7 145 53.8
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.5e-28 131.0 84 73.8
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 2.2e-27 127.1 158 55.1
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 4.2e-26 122.9 82 72.0
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 3.3e-23 113.2 86 65.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 2.2e-22 110.5 195 44.6
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 3.7e-22 109.8 72 75.0
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.3e-22 109.0 77 68.8
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 3.1e-21 106.7 184 35.9
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 4.2e-18 96.3 134 51.5
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.2e-17 94.7 62 74.2
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 3.0e-16 90.1 50 86.0
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 1.2e-15 88.2 281 26.7
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 3.4e-15 86.7 154 31.2
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 7.5e-15 85.5 163 32.5
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.1e-13 81.6 164 28.0
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 5.3e-13 79.3 156 28.2
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 1.2e-09 68.2 156 29.5
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 6.1e-09 65.9 130 29.2
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 8.8e-08 62.0 160 35.0
PRCOL_00003073 Prasinoderma coloniale HOM05D004215 ORTHO05D018306 7.5e-07 58.9 134 33.6
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 2.2e-06 57.4 57 57.9
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 2.2e-06 57.4 57 57.9


User provided reference genes

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