Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.1e-130 469.9 231 100.0
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 7.9e-113 410.6 227 89.4
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 8.8e-112 407.1 227 87.7
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.7e-104 380.9 223 82.5
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 1.1e-103 380.2 223 82.5
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 2.6e-103 379.0 227 82.8
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 5.7e-103 377.9 227 82.4
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.4e-103 377.5 223 82.1
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 2.2e-102 375.9 223 82.1
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 2.8e-102 375.6 223 83.9
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 2.8e-102 375.6 223 81.2
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 2.8e-102 375.6 223 80.3
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.7e-102 375.2 223 81.2
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 3.7e-102 375.2 223 83.9
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 8.2e-102 374.0 227 80.6
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-101 373.6 223 81.6
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-101 373.6 223 81.6
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.1e-101 373.6 223 83.4
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.4e-101 373.2 223 81.6
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 2.4e-101 372.5 282 68.8
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 5.3e-101 371.3 227 81.1
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.0e-99 367.1 223 81.6
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.3e-99 366.7 223 82.1
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 3.8e-99 365.2 227 80.6
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 6.5e-99 364.4 223 79.8
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.5e-98 362.5 227 77.5
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 2.5e-98 362.5 223 77.6
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 4.2e-98 361.7 224 79.9
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 5.5e-98 361.3 223 81.2
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 9.4e-98 360.5 223 78.0
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 9.4e-98 360.5 223 78.0
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.6e-97 359.8 223 78.5
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.6e-97 359.8 227 81.1
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.6e-97 359.8 223 80.7
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 2.1e-97 359.4 227 79.3
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.1e-97 359.4 223 80.7
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 2.1e-97 359.4 227 77.1
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 2.7e-97 359.0 223 78.9
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.6e-97 358.6 227 77.5
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 3.6e-97 358.6 227 78.4
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 6.1e-97 357.8 227 77.5
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 8.0e-97 357.5 227 78.0
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.0e-96 357.1 227 79.3
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 1.4e-96 356.7 223 75.3
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 1.8e-96 356.3 197 87.8
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 2.3e-96 355.9 223 74.9
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 2.3e-96 355.9 227 77.5
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 4.0e-96 355.1 223 74.4
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 5.2e-96 354.8 227 75.3
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 8.8e-96 354.0 223 74.4
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 1.2e-95 353.6 227 77.1
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 1.2e-95 353.6 223 78.5
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.2e-95 353.6 227 78.0
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 2.0e-95 352.8 223 75.8
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.4e-95 351.7 228 77.2
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.4e-95 351.7 228 77.2
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 7.5e-95 350.9 258 70.2
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.3e-94 350.1 223 76.2
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.7e-94 349.7 223 77.1
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 3.7e-94 348.6 227 74.9
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 6.3e-94 347.8 197 84.8
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.1e-93 347.1 223 74.0
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 2.0e-92 342.8 224 74.1
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 4.5e-92 341.7 227 72.7
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.0e-91 340.5 227 74.9
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.0e-91 340.5 227 74.4
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 1.3e-91 340.1 227 75.3
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.3e-91 340.1 229 73.8
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 3.8e-91 338.6 227 74.4
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 6.5e-91 337.8 227 74.9
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 6.5e-91 337.8 227 75.3
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.9e-90 336.3 227 72.2
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 2.5e-90 335.9 227 74.0
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 3.2e-90 335.5 227 73.6
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 3.2e-90 335.5 227 73.6
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 3.2e-90 335.5 227 73.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 7.2e-90 334.3 227 73.1
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 7.2e-90 334.3 227 72.2
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 9.4e-90 334.0 227 73.1
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 9.4e-90 334.0 227 73.1
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.6e-89 333.2 227 74.0
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.6e-89 333.2 223 70.4
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 2.1e-89 332.8 227 72.7
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 2.7e-89 332.4 227 72.7
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 2.7e-89 332.4 266 65.4
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 3.6e-89 332.0 227 72.2
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 3.6e-89 332.0 227 73.1
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.8e-88 329.7 227 73.1
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 4.0e-88 328.6 223 72.6
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 6.8e-88 327.8 227 70.5
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 6.8e-88 327.8 234 70.5
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 2.6e-87 325.9 228 72.8
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 2.8e-86 322.4 228 68.9
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 6.3e-86 321.2 210 76.7
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 5.4e-85 318.2 227 70.9
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.2e-84 317.0 227 68.7
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 5.9e-84 314.7 225 68.9
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 5.9e-84 314.7 225 68.4
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 2.5e-82 309.3 227 69.6
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 4.2e-82 308.5 227 69.2
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 7.2e-82 307.8 223 70.4
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.6e-81 306.6 223 68.6
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.6e-81 306.6 227 68.7
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 4.0e-80 302.0 177 81.9
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 2.0e-79 299.7 223 69.5
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 4.4e-79 298.5 219 65.8
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.3e-78 297.0 227 63.9
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 7.0e-77 291.2 230 63.9
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 7.8e-76 287.7 227 61.7
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.4e-72 276.9 228 61.8
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.0e-71 273.1 172 78.5
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 2.6e-71 272.7 212 63.7
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 6.4e-70 268.1 223 65.9
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 3.5e-68 262.3 227 62.6
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 4.6e-68 261.9 255 58.4
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 4.6e-68 261.9 255 58.4
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.9e-66 256.5 228 55.3
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 3.3e-66 255.8 250 58.4
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 7.3e-66 254.6 245 56.7
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 7.3e-66 254.6 230 62.2
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 5.2e-56 221.9 164 68.9
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.2e-54 216.5 224 50.0
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 1.1e-53 214.2 228 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 4.1e-53 212.2 226 48.2
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.9e-50 203.4 122 79.5
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 1.4e-45 187.2 237 42.6
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 4.2e-45 185.7 227 44.1
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 5.1e-43 178.7 226 43.8
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 2.6e-39 166.4 131 64.1
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 2.1e-36 156.8 211 47.4
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.0e-35 154.5 102 76.5
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.0e-35 152.9 102 75.5
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 4.0e-32 142.5 150 51.3
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.3e-27 126.7 72 80.6
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 3.8e-22 109.4 66 72.7
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 6.0e-20 102.1 74 62.2
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 5.1e-19 99.0 103 54.4
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.7e-17 92.8 51 78.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.7e-17 92.8 51 78.4
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.7e-17 92.8 77 63.6
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.2e-17 91.7 51 78.4
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 8.2e-17 91.7 120 48.3
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 1.1e-16 91.3 77 61.0
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.4e-16 90.1 51 78.4
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 4.2e-13 79.3 232 31.0
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.1e-12 77.0 51 72.5
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.9e-11 72.8 49 69.4
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.7e-11 72.0 51 70.6
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 1.5e-10 70.9 59 61.0
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.5e-07 60.8 56 57.1


User provided reference genes

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