Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 0.0e+00 2007.3 1227 100.0
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 0.0e+00 1352.8 1236 72.2
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 0.0e+00 1200.7 1302 65.5
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 0.0e+00 1194.5 1239 67.5
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 6.0e-292 1008.1 1086 58.3
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 2.5e-242 843.2 1277 54.3
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 7.4e-234 815.1 1266 54.4
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.8e-224 783.9 1277 52.4
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 6.5e-222 775.4 1239 54.7
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 3.7e-217 759.6 1238 43.5
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 2.7e-215 753.4 1245 52.3
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.0e-214 751.5 1238 47.9
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 9.4e-213 745.0 1240 50.3
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 2.2e-209 733.8 1241 50.9
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 2.0e-207 727.2 1273 50.7
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 4.7e-204 716.1 1263 51.5
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 6.1e-204 715.7 1248 51.4
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.0e-202 710.7 1273 50.3
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.3e-201 708.0 1273 50.1
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.7e-201 707.6 1268 50.9
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.8e-200 704.1 1281 47.2
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.3e-197 693.3 1269 48.1
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 9.5e-197 691.8 1274 47.0
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.0e-194 684.1 1241 46.7
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.2e-193 680.6 1269 47.9
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.7e-191 673.7 1242 47.3
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 5.0e-190 669.5 1265 47.3
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.5e-189 667.9 1245 48.9
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.5e-189 667.9 1245 49.6
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.1e-188 664.1 1265 47.9
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.8e-187 661.0 1274 44.0
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 1.4e-184 651.4 1319 47.5
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.4e-184 649.4 1264 47.5
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.7e-183 647.1 1248 46.6
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 7.8e-183 645.6 1291 43.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 2.5e-181 640.6 1258 45.0
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.8e-180 637.1 1203 48.4
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 6.8e-179 632.5 1039 50.4
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 2.6e-178 630.6 1128 45.3
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 9.8e-178 628.6 823 47.4
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.7e-175 620.5 1331 39.3
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 3.5e-175 620.2 1284 44.5
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.9e-174 616.7 1247 47.2
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.4e-171 608.2 1203 47.3
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 4.0e-171 606.7 1262 43.5
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 4.4e-170 603.2 1242 42.8
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.6e-170 602.4 1269 40.4
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.2e-167 595.1 1255 39.2
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 3.0e-166 590.5 1253 44.0
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 2.6e-162 577.4 1254 43.5
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 4.9e-161 573.2 1315 38.8
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 7.8e-159 565.8 1315 38.4
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 2.1e-156 557.8 1329 38.7
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 5.3e-155 553.1 1210 43.8
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 4.9e-153 546.6 1110 46.5
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 9.3e-152 542.3 1269 38.6
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 3.5e-151 540.4 1244 40.8
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 3.0e-150 537.3 1244 42.7
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 1.4e-147 528.5 1261 41.7
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 2.2e-145 521.2 1254 41.2
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.2e-144 517.3 1281 39.3
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 7.4e-141 506.1 1203 37.3
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.8e-139 501.5 1335 38.9
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 2.8e-132 477.6 1258 37.8
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.0e-129 469.2 1068 43.9
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-122 445.7 808 37.0
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 2.6e-122 444.5 1282 39.9
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 2.6e-122 444.5 1260 40.2
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.9e-121 441.0 1164 35.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 5.0e-121 440.3 1284 38.9
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 6.5e-121 439.9 835 37.2
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 1.4e-118 432.2 825 38.4
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 4.8e-116 423.7 1363 33.8
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.2e-114 419.1 1268 42.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.6e-114 417.9 1348 39.6
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.0e-113 416.0 1058 46.9
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.5e-112 411.4 460 50.2
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 7.2e-112 409.8 1113 41.2
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.3e-110 404.8 1284 41.2
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.6e-106 392.1 1274 33.4
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.0e-105 389.4 1267 38.4
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 2.6e-101 374.8 1025 37.4
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.2e-100 371.7 1263 38.2
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.8e-100 370.5 1273 34.2
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.4e-99 369.0 1120 41.0
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.1e-99 367.9 709 36.4
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.1e-99 367.5 741 34.7
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 6.5e-97 360.1 1075 41.0
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 4.7e-95 354.0 1083 34.0
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.8e-92 344.0 1026 43.0
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.1e-91 342.8 1069 34.5
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.6e-90 339.0 1378 34.9
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 7.7e-90 336.7 1135 39.4
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.9e-89 334.7 1077 32.9
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.8e-89 334.3 782 34.8
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.5e-88 331.6 853 32.5
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 4.7e-87 327.4 600 37.5
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 8.0e-87 326.6 556 40.1
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 8.0e-87 326.6 556 40.1
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 4.0e-86 324.3 638 38.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 5.2e-86 323.9 1341 38.9
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 6.8e-86 323.6 774 33.7
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 8.8e-86 323.2 1322 33.7
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 2.6e-85 321.6 772 34.7
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 7.5e-85 320.1 1418 35.5
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.3e-84 319.3 642 38.0
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.1e-83 314.3 832 32.7
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.1e-83 314.3 835 32.3
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 3.8e-81 307.8 608 35.7
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 5.0e-81 307.4 1327 35.6
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 5.0e-81 307.4 1308 39.0
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 6.6e-81 307.0 607 36.2
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.5e-80 305.8 1358 34.9
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.8e-79 301.6 823 31.5
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 5.7e-77 293.9 645 34.1
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.9e-76 290.8 1109 35.6
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.4e-75 289.3 1419 32.8
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 7.0e-75 287.0 799 31.5
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.4e-70 272.7 1216 37.6
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.4e-70 272.7 1126 39.8
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 8.9e-70 270.0 1325 30.8
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 2.4e-67 261.9 829 30.5
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 7.8e-66 256.9 1321 27.7
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.9e-64 252.3 1026 30.1
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 3.3e-64 251.5 458 37.6
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.1e-63 248.8 1112 34.6
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.4e-62 246.1 623 31.6
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 8.9e-62 243.4 1308 34.2
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 8.9e-62 243.4 1308 34.2
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 8.3e-60 236.9 786 30.3
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.2e-55 223.0 837 29.6
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 6.8e-54 217.2 1446 30.8
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 4.9e-52 211.1 834 28.8
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 2.4e-51 208.8 624 31.7
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 4.1e-51 208.0 1362 29.1
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 7.3e-48 197.2 686 30.5
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.4e-46 193.0 605 28.9
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.8e-46 192.6 650 29.8
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.9e-44 185.3 1059 34.0
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.5e-40 172.9 946 38.4
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 6.2e-39 167.5 586 28.3
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-38 166.8 1294 35.5
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 7.6e-37 160.6 536 29.3
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.2e-36 159.1 586 28.3
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 5.1e-33 147.9 1085 31.5
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 5.1e-33 147.9 779 26.7
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-32 146.7 1286 34.8
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.5e-29 136.3 1110 30.0
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 2.6e-29 135.6 1132 34.5
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.2e-26 126.7 590 25.4
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 3.0e-25 122.1 541 27.0
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 5.3e-22 111.3 611 24.4
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.3e-22 111.3 334 28.4
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.9e-22 110.9 548 30.5
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.0e-21 109.4 217 44.2
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.3e-17 95.9 597 24.6
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.1e-16 93.6 212 40.6
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.5e-16 92.4 520 26.0
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 3.7e-15 88.6 398 28.4
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.5e-13 83.2 308 35.1
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 8.5e-12 77.4 959 33.3
SHI02386 Sapria himalayana HOM05D003962 ORTHO05D004714 3.7e-07 62.0 96 45.8
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.3e-07 61.2 354 30.5
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 1.4e-06 60.1 235 27.7
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.8e-06 59.7 140 31.4
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.8e-06 59.7 140 31.4


User provided reference genes

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