Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 0.0e+00 2011.9 1011 100.0
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 0.0e+00 1453.7 1016 75.3
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 0.0e+00 1394.0 1027 72.1
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 0.0e+00 1293.9 1017 69.9
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 0.0e+00 1085.1 1017 59.8
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 5.4e-307 1057.7 1012 58.8
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 4.0e-302 1041.6 1021 57.8
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 2.3e-297 1025.8 1012 57.7
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 4.4e-293 1011.5 1016 56.9
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 3.8e-292 1008.4 1012 55.7
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 8.7e-289 997.3 1015 56.1
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 4.8e-287 991.5 1021 55.9
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.8e-286 989.6 1018 55.1
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 3.4e-285 985.3 1018 55.6
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 4.9e-284 981.5 1017 56.5
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 8.7e-281 970.7 1025 54.8
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.1e-280 970.3 1020 55.1
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.6e-279 966.5 1022 54.8
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.1e-278 962.2 1022 54.9
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 5.8e-277 958.0 1013 54.6
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 1.9e-275 953.0 1075 52.5
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 5.7e-264 914.8 1015 53.3
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 4.8e-263 911.8 1015 53.0
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 5.3e-262 908.3 900 56.8
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.1e-258 896.3 1005 52.7
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 5.5e-251 871.7 1018 51.6
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.5e-243 846.3 1019 50.3
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 2.7e-242 842.8 1023 49.2
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 2.3e-241 839.7 870 54.8
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 4.8e-239 832.0 1072 47.7
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 3.8e-236 822.4 1072 47.5
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 8.5e-236 821.2 1033 48.4
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 6.8e-233 811.6 1017 49.1
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 1.5e-232 810.4 981 48.4
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 1.7e-231 807.0 1022 48.0
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.8e-228 795.8 827 54.2
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 7.2e-227 791.6 1004 48.7
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 7.5e-224 781.6 1008 48.2
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 3.3e-219 766.1 1019 48.3
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 7.5e-216 755.0 794 54.0
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 1.7e-215 753.8 1014 46.7
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 3.0e-212 743.0 1030 45.8
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 1.1e-211 741.1 1014 47.0
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 1.9e-211 740.3 1023 46.4
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 5.6e-211 738.8 1026 45.2
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 1.0e-209 734.6 1032 46.1
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.3e-209 733.4 1029 45.3
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.2e-208 731.1 1024 45.8
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 7.5e-208 728.4 906 48.7
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 2.6e-200 703.4 1014 43.5
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 3.2e-198 696.4 1018 43.5
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 1.7e-196 690.6 1011 43.8
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 1.8e-193 680.6 1021 44.6
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 8.9e-193 678.3 1022 43.5
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.2e-192 677.9 1020 43.8
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 4.4e-192 676.0 1052 43.0
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.2e-189 667.9 790 49.4
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 1.0e-188 664.8 1009 42.7
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 3.0e-188 663.3 1011 42.7
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.5e-187 661.0 1030 42.1
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 5.2e-185 652.5 1012 41.9
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 5.2e-185 652.5 1011 44.4
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 8.9e-185 651.7 1021 43.3
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 2.0e-184 650.6 1012 44.5
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.3e-180 637.9 1029 41.8
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 5.1e-180 636.0 1027 42.2
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 1.9e-179 634.0 1020 41.2
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.9e-179 634.0 1013 43.1
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.9e-179 634.0 907 45.5
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 2.5e-179 633.6 1014 41.4
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 2.5e-179 633.6 1019 42.3
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 4.3e-179 632.9 1011 40.6
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 2.1e-178 630.6 1016 41.7
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 5.3e-177 625.9 1010 43.2
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 2.6e-176 623.6 1013 40.7
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 4.5e-176 622.9 1018 40.3
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 4.5e-176 622.9 1018 40.3
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 9.9e-176 621.7 1014 40.5
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 4.9e-175 619.4 1005 42.3
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 7.1e-174 615.5 1014 40.5
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 2.1e-173 614.0 1015 42.6
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 6.0e-173 612.5 1014 40.5
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 3.0e-172 610.1 1019 41.2
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 8.7e-172 608.6 1024 41.1
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 1.9e-171 607.4 1014 41.6
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 4.3e-171 606.3 902 43.6
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 1.8e-169 600.9 1016 40.5
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 4.0e-169 599.7 1013 41.1
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 9.0e-169 598.6 1013 40.8
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 3.8e-167 593.2 1014 41.3
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 2.8e-162 577.0 1015 40.0
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.4e-153 548.1 938 41.0
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 9.0e-153 545.4 663 48.7
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 1.9e-147 527.7 1022 38.7
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.7e-138 498.0 964 38.9
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 3.6e-133 480.3 1017 37.9
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 2.2e-122 444.5 1065 34.2
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.4e-121 441.0 478 52.1
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 2.4e-121 441.0 618 43.7
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 2.4e-113 414.5 600 46.2
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 7.0e-113 412.9 483 52.4
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 7.7e-112 409.5 981 33.6
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 5.0e-111 406.8 913 34.5
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.0e-108 399.1 1032 33.1
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 7.8e-104 382.9 485 50.5
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 8.0e-101 372.9 616 37.8
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.1e-97 362.5 411 51.3
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 4.3e-94 350.5 383 54.6
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 5.8e-91 340.1 436 50.7
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 3.5e-88 330.9 1018 30.6
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 7.8e-88 329.7 1044 29.6
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 4.1e-81 307.4 1091 28.9
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 1.2e-72 279.3 329 50.8
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 4.3e-70 270.8 249 62.7
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.2e-69 269.2 971 27.6
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 3.2e-57 228.0 319 47.3
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 9.3e-57 226.5 311 45.3
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 1.5e-54 219.2 252 55.2
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 2.2e-42 178.7 370 37.0
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 2.1e-40 172.2 1018 24.1
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.8e-39 169.1 506 32.0
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 1.2e-27 129.8 159 49.7
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 6.3e-21 107.5 80 77.5
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 2.9e-18 98.6 194 38.7
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 1.9e-17 95.9 979 21.3
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 3.6e-16 91.7 186 38.2
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 7.0e-12 77.4 354 25.7
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 2.6e-11 75.5 192 34.9
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 5.9e-11 74.3 146 41.1
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 1.5e-09 69.7 181 35.4
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 1.5e-09 69.7 74 56.8
Cfa023062 Carpinus fangiana HOM05D005720 ORTHO05D006984 8.8e-07 60.5 54 61.1
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.5e-06 59.7 176 34.7


User provided reference genes

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