Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.7e-199 699.1 350 100.0
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 2.7e-128 462.6 305 76.1
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 1.1e-116 424.1 356 63.8
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 4.7e-109 398.7 292 72.6
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.5e-107 393.7 295 67.5
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 2.6e-107 392.9 296 67.9
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 6.6e-103 378.3 300 66.3
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.5e-102 377.1 303 64.4
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 2.5e-102 376.3 296 64.5
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 5.2e-100 368.6 314 60.5
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 6.4e-98 361.7 295 60.7
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 6.4e-98 361.7 311 60.1
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 5.4e-97 358.6 300 61.7
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 9.2e-97 357.8 302 59.6
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 2.1e-96 356.7 295 61.0
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 3.0e-95 352.8 301 59.5
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 8.1e-93 344.7 298 59.7
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.1e-92 344.4 297 57.9
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.2e-91 340.9 300 60.3
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.8e-91 338.6 299 59.9
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 9.9e-91 337.8 304 58.2
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 1.3e-90 337.4 305 59.7
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.7e-90 337.0 304 57.2
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.2e-90 336.7 301 59.1
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.9e-90 336.3 301 55.1
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 6.4e-90 335.1 291 60.8
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 2.4e-89 333.2 309 58.9
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.2e-89 332.8 302 57.6
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 4.2e-89 332.4 307 58.3
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.2e-88 330.9 295 58.0
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.1e-88 330.1 301 58.5
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.7e-87 327.0 295 57.3
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.9e-86 323.6 311 57.9
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.9e-86 323.6 311 57.9
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.3e-85 320.9 295 57.3
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.8e-85 319.7 311 57.6
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.6e-85 319.3 311 57.2
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.2e-85 318.5 311 57.2
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 3.1e-84 316.2 295 55.6
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.6e-83 313.2 292 55.1
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 9.9e-83 311.2 294 52.7
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 9.9e-83 311.2 301 53.2
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.9e-82 309.7 301 53.8
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.4e-82 308.1 343 52.2
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 8.4e-82 308.1 300 52.7
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 5.4e-81 305.4 336 51.2
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.6e-80 303.9 260 61.2
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 6.0e-80 302.0 294 55.1
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.0e-79 301.2 297 54.2
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.8e-79 300.4 303 52.8
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 6.7e-79 298.5 295 52.9
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.6e-77 293.9 300 53.7
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 5.3e-76 288.9 297 51.2
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.5e-75 287.3 300 54.3
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.1e-73 281.2 311 48.2
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 1.4e-73 280.8 301 51.2
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.2e-73 279.6 300 50.7
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.6e-72 277.3 294 50.0
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.6e-72 277.3 300 50.7
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 7.9e-72 275.0 305 49.8
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.0e-71 274.6 298 49.0
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 6.7e-71 271.9 300 49.7
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 4.3e-70 269.2 295 49.2
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.3e-69 267.7 296 49.0
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 7.6e-67 258.5 297 49.2
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.4e-65 254.2 295 49.5
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 7.9e-64 248.4 210 62.4
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.0e-63 248.1 222 60.8
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.7e-63 245.4 306 46.4
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 8.7e-63 245.0 274 50.0
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.9e-62 243.8 299 46.2
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 4.3e-62 242.7 293 44.7
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 4.3e-62 242.7 335 44.8
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 9.7e-62 241.5 204 62.7
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.4e-60 237.7 289 45.7
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 2.2e-58 230.3 268 47.8
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 6.5e-58 228.8 217 56.2
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 2.5e-57 226.9 288 47.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 6.1e-56 222.2 288 46.5
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 6.1e-56 222.2 198 59.1
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.1e-54 218.0 314 40.8
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 5.7e-54 215.7 296 41.6
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 2.2e-53 213.8 166 66.9
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.7e-53 213.0 288 44.1
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.7e-53 213.0 226 50.0
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 4.8e-53 212.6 288 44.1
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.4e-52 210.3 267 42.3
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 4.1e-52 209.5 287 44.6
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 7.9e-48 195.3 225 48.9
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 3.3e-46 189.9 197 49.7
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.7e-45 187.6 293 41.6
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 2.4e-44 183.7 248 43.5
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 2.5e-41 173.7 240 45.4
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 9.4e-41 171.8 230 44.3
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.0e-39 166.8 308 33.1
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 8.8e-39 165.2 237 42.6
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 2.0e-38 164.1 158 52.5
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 3.3e-38 163.3 230 45.2
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 2.4e-36 157.1 231 42.9
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 2.4e-36 157.1 303 34.0
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 4.5e-35 152.9 212 44.3
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 5.9e-35 152.5 305 35.4
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 1.7e-34 151.0 207 44.0
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.0e-31 141.7 263 33.1
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.3e-31 140.6 293 33.8
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.0e-30 137.5 96 76.0
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 4.4e-30 136.3 343 29.7
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.7e-29 133.3 220 39.5
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.8e-28 131.0 137 50.4
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 5.3e-28 129.4 109 65.1
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.6e-27 127.9 144 45.8
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.5e-27 126.3 112 59.8
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.1e-25 121.7 124 57.3
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.9e-25 120.9 80 80.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.9e-25 120.9 80 80.0
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 8.0e-24 115.5 109 56.9
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 8.0e-24 115.5 79 79.7
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 5.2e-23 112.8 295 29.8
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.6e-19 101.3 174 33.3
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.6e-19 101.3 67 74.6
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 5.9e-19 99.4 149 43.6
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 5.9e-19 99.4 67 73.1
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.7e-18 97.8 62 77.4
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 4.0e-15 86.7 132 34.1
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.0e-14 84.3 61 67.2
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 5.7e-14 82.8 54 68.5
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 7.5e-14 82.4 193 30.6


User provided reference genes

Program Settings