Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 2.0e-297 1025.0 523 100.0
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.0e-237 824.7 529 82.2
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.3e-224 783.1 544 76.1
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 1.9e-215 752.7 529 77.3
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 1.9e-207 726.1 539 72.0
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.4e-205 719.9 426 84.3
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 1.3e-203 713.4 541 70.8
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 2.9e-203 712.2 523 72.3
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 2.5e-199 699.1 557 67.5
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 3.4e-196 688.7 543 67.8
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 2.4e-194 682.6 526 69.8
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 5.5e-194 681.4 551 66.8
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 9.3e-194 680.6 540 67.6
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 2.7e-193 679.1 542 67.3
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 1.5e-191 673.3 432 78.7
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 4.3e-191 671.8 547 67.8
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 9.6e-191 670.6 546 67.8
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 3.7e-190 668.7 555 65.9
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.8e-190 668.3 542 67.5
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 4.0e-189 665.2 542 67.3
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.0e-188 662.9 531 67.2
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 3.2e-186 655.6 530 67.5
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 9.3e-186 654.1 542 66.4
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 1.6e-185 653.3 548 67.0
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 1.3e-184 650.2 463 71.9
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 5.1e-184 648.3 542 65.5
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 7.4e-183 644.4 544 64.7
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 9.7e-183 644.0 600 60.2
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 1.3e-182 643.7 493 67.7
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 8.2e-182 641.0 526 65.0
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.8e-181 639.8 538 64.7
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.8e-181 639.8 526 65.0
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 2.4e-181 639.4 534 63.1
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.4e-181 639.4 524 66.2
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.9e-181 637.9 524 66.0
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 2.6e-180 636.0 541 64.9
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.9e-180 634.8 525 65.0
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.0e-179 634.0 525 64.8
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 1.7e-179 633.3 535 63.2
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.7e-179 633.3 518 66.6
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 4.2e-178 628.6 535 62.4
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 7.2e-178 627.9 537 64.6
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 2.1e-177 626.3 542 62.7
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.7e-177 625.9 529 63.1
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 2.7e-177 625.9 529 63.3
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 5.1e-176 621.7 520 64.4
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 6.7e-176 621.3 480 69.0
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 8.7e-176 620.9 456 72.6
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 8.7e-176 620.9 538 61.0
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 2.8e-174 615.9 518 66.0
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 3.7e-174 615.5 455 71.9
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 1.4e-173 613.6 457 72.0
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 5.3e-173 611.7 544 63.2
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.5e-172 610.1 456 71.1
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 4.5e-172 608.6 536 63.6
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 4.5e-172 608.6 492 65.4
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 5.9e-172 608.2 520 62.7
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 7.7e-172 607.8 456 70.8
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.1e-170 604.0 547 59.8
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 1.4e-170 603.6 532 60.5
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 2.5e-170 602.8 522 61.7
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 9.4e-170 600.9 429 71.8
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.2e-169 600.5 464 69.4
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 6.1e-169 598.2 527 61.7
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 7.9e-169 597.8 523 61.4
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 7.9e-169 597.8 518 62.7
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.4e-168 597.0 524 61.5
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 3.0e-168 595.9 521 61.2
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 5.1e-168 595.1 449 70.2
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 8.8e-168 594.3 524 61.5
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 5.7e-167 591.7 499 63.9
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 6.9e-165 584.7 553 58.8
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 3.4e-164 582.4 516 60.7
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 5.9e-164 581.6 516 60.7
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 1.3e-163 580.5 491 62.5
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 2.9e-163 579.3 516 60.5
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 3.8e-163 578.9 449 67.9
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 5.0e-163 578.6 516 60.3
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 8.5e-163 577.8 516 60.3
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 2.5e-162 576.2 462 64.5
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 3.6e-161 572.4 536 60.3
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 4.7e-161 572.0 532 59.4
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.3e-160 569.7 574 58.2
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 3.0e-160 569.3 523 60.0
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 3.0e-160 569.3 425 68.9
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 9.7e-159 564.3 478 62.6
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 2.2e-158 563.1 523 58.9
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 3.7e-158 562.4 559 56.2
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.8e-157 560.1 568 55.6
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.6e-156 556.2 459 64.9
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 7.7e-156 554.7 424 67.5
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 7.0e-149 531.6 533 57.2
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 4.5e-148 528.9 540 56.1
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 7.2e-146 521.5 544 55.3
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 1.0e-144 517.7 480 59.0
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 4.0e-144 515.8 411 64.5
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 7.5e-143 511.5 320 80.0
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 4.8e-142 508.8 532 57.0
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 1.4e-141 507.3 525 56.0
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.4e-141 506.5 519 55.1
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 1.6e-140 503.8 364 73.1
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 2.3e-139 500.0 371 72.0
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 7.2e-138 495.0 530 54.0
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 9.5e-138 494.6 663 47.2
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.0e-136 489.2 408 63.5
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 4.9e-134 482.3 459 59.5
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 5.8e-127 458.8 540 49.1
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 3.2e-109 399.8 434 53.7
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.1e-104 384.8 300 67.7
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 2.4e-104 383.6 483 49.7
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.0e-99 368.2 525 46.1
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.5e-95 354.4 375 50.9
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 8.7e-91 338.6 284 58.5
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 1.1e-90 338.2 259 66.8
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.2e-77 293.5 241 68.0
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 2.1e-73 280.8 500 37.6
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 1.5e-66 258.1 526 35.0
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 2.5e-66 257.3 283 51.9
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 1.4e-56 224.9 561 30.7
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.6e-47 194.1 244 49.2
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 6.7e-43 179.5 234 51.7
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 6.7e-35 152.9 120 59.2
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.6e-34 151.0 95 76.8
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 7.7e-31 139.4 192 35.4
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 1.5e-26 125.2 163 46.6
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 8.3e-25 119.4 80 70.0
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 9.1e-24 115.9 62 83.9
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.8e-16 91.7 82 54.9
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 7.8e-15 86.3 137 46.7


User provided reference genes

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