Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G003200 Carya illinoinensis HOM05D002831 ORTHO05D010484 2.7e-24 114.4 53 100.0
CiPaw.06G003400 Carya illinoinensis HOM05D002831 ORTHO05D010484 6.0e-24 113.2 53 98.1
Atru.ctg97_1.17 Acer truncatum HOM05D002831 ORTHO05D010484 4.0e-20 100.5 53 86.8
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 4.0e-20 100.5 51 86.3
MD01G1208000 Malus domestica HOM05D002831 ORTHO05D010484 5.3e-20 100.1 53 86.8
Prupe.2G300500 Prunus persica HOM05D002831 ORTHO05D010484 5.3e-20 100.1 53 86.8
Thecc.03G183800 Theobroma cacao HOM05D002831 ORTHO05D010484 9.0e-20 99.4 53 84.9
Prupe.7G027400 Prunus persica HOM05D002831 ORTHO05D010484 4.5e-19 97.1 51 86.3
Potri.004G080000 Populus trichocarpa HOM05D002831 ORTHO05D010484 5.8e-19 96.7 53 83.0
Manes.14G022900 Manihot esculenta HOM05D002831 ORTHO05D010484 7.6e-19 96.3 53 81.1
MD07G1278600 Malus domestica HOM05D002831 ORTHO05D010484 9.9e-19 95.9 53 83.0
Gohir.D09G177300 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.3e-18 95.5 53 81.1
Gorai.006G199300 Gossypium raimondii HOM05D002831 ORTHO05D010484 1.7e-18 95.1 53 79.2
Manes.06G152150 Manihot esculenta HOM05D002831 ORTHO05D010484 1.7e-18 95.1 53 79.2
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.9e-18 94.4 52 82.7
CiPaw.12G018400 Carya illinoinensis HOM05D002831 ORTHO05D010484 3.8e-18 94.0 44 97.7
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 3.8e-18 94.0 52 80.8
Gohir.D11G011200 Gossypium hirsutum HOM05D002831 ORTHO05D010484 4.9e-18 93.6 53 81.1
Gohir.A11G012000 Gossypium hirsutum HOM05D002831 ORTHO05D010484 6.4e-18 93.2 53 81.1
Glyma.20G162551 Glycine max HOM05D002831 ORTHO05D010484 8.4e-18 92.8 53 79.2
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.1e-17 92.4 52 76.9
Potri.017G143300 Populus trichocarpa HOM05D002831 ORTHO05D010484 5.4e-17 90.1 53 77.4
Nn1g01626 Nelumbo nucifera HOM05D002831 ORTHO05D010484 7.1e-17 89.7 53 79.2
Glyma.09G132600 Glycine max HOM05D002831 ORTHO05D010484 1.6e-16 88.6 53 79.2
Glyma.16G179250 Glycine max HOM05D002831 ORTHO05D010484 1.6e-16 88.6 53 79.2
Glyma.10G231251 Glycine max HOM05D002831 ORTHO05D010484 2.1e-16 88.2 53 71.7
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.1e-16 88.2 52 75.0
CSS0001563 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 2.7e-16 87.8 53 73.6
CSS0038907 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 2.7e-16 87.8 53 73.6
Peaxi162Scf00444g00118 Petunia axillaris HOM05D002831 ORTHO05D010484 2.7e-16 87.8 53 77.4
Lalb_Chr02g0141241 Lupinus albus HOM05D002831 ORTHO05D010484 4.6e-16 87.0 54 75.9
Carub.0008s1269 Capsella rubella HOM05D002831 ORTHO05D010484 7.9e-16 86.3 53 71.7
Cc02_g02410 Coffea canephora HOM05D002831 ORTHO05D010484 1.3e-15 85.5 53 77.4
Gohir.A12G255400 Gossypium hirsutum HOM05D002831 ORTHO05D010484 3.0e-15 84.3 53 73.6
Gohir.D12G256800 Gossypium hirsutum HOM05D002831 ORTHO05D010484 3.0e-15 84.3 53 73.6
Gorai.008G275000 Gossypium raimondii HOM05D002831 ORTHO05D010484 3.0e-15 84.3 53 73.6
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 5.1e-15 83.6 43 86.0
FAN03G0192 Fragaria x ananassa HOM05D002831 ORTHO05D010484 5.1e-15 83.6 44 86.4
Nitab4.5_0000084g0420 Nicotiana tabacum HOM05D002831 ORTHO05D010484 6.7e-15 83.2 52 75.0
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 6.7e-15 83.2 44 86.4
ClCG05G008350 Citrullus lanatus HOM05D002831 ORTHO05D010484 8.7e-15 82.8 53 73.6
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 8.7e-15 82.8 44 86.4
CARHR233120 Cardamine hirsuta HOM05D002831 ORTHO05D010484 1.5e-14 82.0 53 71.7
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 1.5e-14 82.0 44 84.1
Nitab4.5_0003825g0100 Nicotiana tabacum HOM05D002831 ORTHO05D010484 1.5e-14 82.0 52 76.9
Solyc03g007990.2 Solanum lycopersicum HOM05D002831 ORTHO05D010484 2.5e-14 81.3 53 73.6
Carub.0007s1529 Capsella rubella HOM05D002831 ORTHO05D010484 1.3e-13 79.0 53 66.0
Lalb_Chr03g0034821 Lupinus albus HOM05D002831 ORTHO05D010484 1.6e-13 78.6 50 70.0
Lalb_Chr21g0305231 Lupinus albus HOM05D002831 ORTHO05D010484 1.6e-13 78.6 54 70.4
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.8e-13 77.8 46 73.9
CAN.G126.13 Capsicum annuum HOM05D002831 ORTHO05D010484 3.7e-13 77.4 53 71.7
CAN.G204.17 Capsicum annuum HOM05D002831 ORTHO05D010484 1.1e-12 75.9 53 71.7
BolC1t02050H Brassica oleracea HOM05D002831 ORTHO05D010484 2.4e-12 74.7 53 66.0
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 2.4e-12 74.7 43 79.1
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 3.1e-12 74.3 43 76.7
BraA01t01649Z Brassica rapa HOM05D002831 ORTHO05D010484 6.9e-12 73.2 53 64.2
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 6.9e-12 73.2 46 76.1
CSS0020125 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.2e-11 72.4 53 67.9
CSS0026204 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.2e-11 72.4 53 67.9
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 2.6e-11 71.2 43 74.4
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 3.4e-11 70.9 45 68.9
BolC1t02047H Brassica oleracea HOM05D002831 ORTHO05D010484 5.8e-11 70.1 53 66.0
BraA01t01646Z Brassica rapa HOM05D002831 ORTHO05D010484 5.8e-11 70.1 53 66.0
A03p56200 Brassica napus HOM05D002831 ORTHO05D010484 2.9e-10 67.8 53 60.4
BraA03t14690Z Brassica rapa HOM05D002831 ORTHO05D010484 2.9e-10 67.8 53 60.4
Lalb_Chr06g0161311 Lupinus albus HOM05D002831 ORTHO05D010484 8.4e-10 66.2 44 72.7
A02p11710 Brassica napus HOM05D002831 ORTHO05D010484 5.5e-09 63.5 37 70.3
BolC7t45935H Brassica oleracea HOM05D002831 ORTHO05D010484 1.6e-08 62.0 53 56.6
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.6e-08 62.0 44 75.0
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 6.0e-08 60.1 46 58.7
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.0e-07 59.3 53 54.7
Peaxi162Scf00618g00726 Petunia axillaris HOM05D002831 ORTHO05D010484 1.3e-07 58.9 44 68.2
CARHR233140 Cardamine hirsuta HOM05D002831 ORTHO05D010484 3.0e-07 57.8 35 68.6
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.0e-07 57.8 47 55.3
Sabra05G0003700 Salix brachista HOM05D000273 ORTHO05D000198 3.0e-07 57.8 37 70.3
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 3.9e-07 57.4 52 50.0
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.1e-07 57.0 32 81.2
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.1e-07 57.0 32 81.2
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 5.1e-07 57.0 39 66.7
Carub.0007s1526 Capsella rubella HOM05D002831 ORTHO05D010484 1.9e-06 55.1 45 57.8
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 5.6e-06 53.5 33 66.7


User provided reference genes

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