Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1924.1 978 100.0
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1430.6 963 76.2
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1405.2 973 75.2
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 0.0e+00 1257.7 1148 61.7
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1255.4 973 67.8
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1255.0 980 67.4
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1219.1 962 65.8
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1189.5 962 64.7
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1185.2 963 65.5
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1184.5 960 64.1
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1181.4 963 64.4
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1180.6 959 65.0
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1169.5 956 65.1
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1165.6 998 61.5
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1164.8 965 62.5
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1161.0 960 62.9
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1158.3 963 62.6
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1157.9 960 63.3
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1156.7 973 62.6
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1149.8 974 63.0
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1149.8 968 62.3
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1149.8 968 63.9
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1147.1 1002 61.4
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1146.7 972 63.5
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1139.0 974 62.6
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1137.9 956 63.5
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1137.5 991 62.6
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1132.5 974 62.4
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1129.8 989 60.6
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1127.9 1008 59.4
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1107.4 1083 56.5
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1106.7 962 60.9
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1103.2 1014 58.4
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1102.4 974 61.3
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1102.4 969 62.2
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 0.0e+00 1095.1 956 62.3
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 0.0e+00 1094.7 953 61.2
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1093.6 971 60.5
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1087.4 963 61.4
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1086.2 1088 54.7
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1081.6 986 60.3
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 0.0e+00 1080.9 880 66.1
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 0.0e+00 1080.5 995 59.5
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1079.7 971 60.1
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1075.8 971 59.9
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 2.9e-310 1068.5 962 58.9
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 1.1e-309 1066.6 984 58.2
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 9.5e-309 1063.5 957 60.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 2.1e-308 1062.4 979 59.1
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.1e-304 1050.0 956 57.8
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.6e-303 1044.6 980 58.7
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 6.6e-302 1040.8 964 58.8
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.1e-301 1040.0 976 58.0
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 6.2e-300 1034.2 1031 56.1
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.5e-298 1029.6 965 58.4
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 2.6e-298 1028.9 1057 55.0
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.8e-297 1025.0 958 58.2
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.9e-296 1022.7 999 56.6
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 3.2e-296 1021.9 965 57.3
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 1.2e-295 1020.0 953 57.5
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.6e-295 1019.6 975 58.5
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 1.3e-294 1016.5 965 57.2
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 2.3e-294 1015.8 958 58.4
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 1.9e-293 1012.7 954 56.8
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 4.3e-293 1011.5 950 57.9
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 2.1e-292 1009.2 956 57.3
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 4.8e-292 1008.1 973 57.1
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 4.8e-292 1008.1 1011 54.8
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.4e-291 1006.5 1022 53.8
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 7.6e-290 1000.7 955 57.1
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 2.2e-289 999.2 1005 53.6
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.0e-286 990.3 1003 54.8
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 3.9e-286 988.4 989 54.5
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 5.1e-286 988.0 960 56.2
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 8.1e-284 980.7 1028 53.7
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 1.1e-283 980.3 957 56.4
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 1.1e-283 980.3 957 56.4
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 2.4e-283 979.2 1002 53.5
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.2e-282 976.9 956 55.9
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.5e-282 976.5 956 56.4
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 4.5e-282 974.9 956 56.1
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.3e-281 973.4 957 56.1
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 4.6e-279 964.9 958 56.1
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 1.0e-278 963.8 1014 53.3
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 6.7e-278 961.1 958 56.3
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 6.5e-273 944.5 836 60.3
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 8.4e-273 944.1 968 53.6
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.6e-271 939.9 1021 51.2
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.8e-262 909.8 832 58.2
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.1e-256 890.6 1008 50.1
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.8e-254 883.2 990 52.0
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 3.0e-254 882.5 982 51.2
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.1e-251 874.0 967 51.1
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 5.9e-250 868.2 1017 49.9
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.1e-245 854.0 992 49.6
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 4.5e-242 842.0 905 54.0
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.0e-238 830.9 971 49.3
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 4.1e-235 818.9 994 47.4
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.2e-233 813.1 550 74.0
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 8.5e-233 811.2 985 48.3
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 1.2e-223 780.8 513 75.6
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 3.6e-215 752.7 937 48.6
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.1e-206 724.5 974 46.1
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.4e-206 724.2 970 45.5
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.6e-202 709.1 522 67.8
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 1.1e-182 644.8 997 39.4
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 4.8e-159 566.2 964 36.5
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 2.1e-154 550.8 973 36.1
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 1.9e-152 544.3 804 41.4
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.3e-116 425.2 953 31.0
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.4e-113 415.2 301 70.8
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.6e-88 331.3 246 69.1
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 6.4e-79 300.1 411 41.6
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 7.1e-62 243.4 173 70.5
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.6e-58 232.3 177 64.4
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 4.8e-50 204.1 236 47.5
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.5e-48 199.1 135 77.0
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 5.8e-40 170.6 610 27.4
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 5.9e-32 144.1 105 66.7
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 2.2e-31 142.1 84 75.0
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.0e-31 141.0 97 72.2
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 6.5e-31 140.6 124 56.5
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.5e-27 129.4 106 64.2
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 9.7e-27 126.7 234 35.9
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.7e-26 125.9 81 76.5
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 5.0e-23 114.4 121 51.2
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.1e-22 113.2 437 30.7
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.2e-22 111.3 120 53.3
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.7e-21 108.6 125 52.0
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 3.9e-20 104.8 148 45.3
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.1e-19 103.2 132 47.0
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 1.4e-17 96.3 70 62.9
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.8e-09 69.3 54 63.0
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.7e-08 65.5 86 38.4
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 3.2e-06 58.5 53 52.8
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 4.2e-06 58.2 41 61.0


User provided reference genes

Program Settings