Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 3.7e-194 681.4 358 100.0
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 2.9e-154 548.9 356 81.7
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 7.4e-150 534.3 361 80.3
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 5.5e-145 518.1 356 78.4
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 2.8e-141 505.8 362 76.0
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.5e-139 500.0 376 75.0
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.0e-138 497.3 369 75.3
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.1e-137 493.8 369 74.5
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.5e-137 492.7 359 75.5
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.5e-137 492.7 369 74.3
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 3.2e-137 492.3 372 75.0
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 4.2e-137 491.9 374 73.8
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 4.6e-136 488.4 372 75.3
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.0e-135 487.3 365 74.0
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.3e-135 486.9 314 82.2
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.8e-135 486.5 330 77.9
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 2.3e-135 486.1 365 74.5
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 3.0e-135 485.7 368 72.8
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.0e-135 485.7 370 73.8
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 8.7e-135 484.2 369 74.3
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.9e-134 483.0 362 74.3
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 2.5e-134 482.6 357 75.1
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 3.3e-134 482.3 345 76.8
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 5.7e-134 481.5 373 71.0
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 5.7e-134 481.5 362 74.6
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 7.4e-134 481.1 360 74.2
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 9.7e-134 480.7 362 72.7
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 8.2e-133 477.6 340 77.4
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.4e-132 476.9 363 74.1
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 2.4e-132 476.1 313 79.2
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.9e-132 474.6 357 74.2
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 9.1e-132 474.2 363 73.6
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.2e-131 473.8 362 71.3
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.5e-131 473.4 362 71.3
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.5e-131 473.4 354 74.0
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 2.0e-131 473.0 364 72.5
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.6e-131 472.6 330 77.3
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 2.6e-131 472.6 370 72.2
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 4.5e-131 471.9 357 72.8
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 5.9e-131 471.5 360 71.7
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 5.9e-131 471.5 368 71.2
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.7e-130 469.9 357 73.4
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 2.9e-130 469.2 328 77.1
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.4e-129 466.8 328 76.5
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.5e-129 466.1 366 72.1
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 2.5e-129 466.1 299 81.9
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.2e-129 465.7 358 72.1
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 4.2e-129 465.3 361 72.0
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 7.2e-129 464.5 367 72.5
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.2e-129 464.5 367 72.5
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.2e-129 464.5 367 72.5
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 7.2e-129 464.5 311 77.5
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 7.2e-129 464.5 358 72.3
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 7.2e-129 464.5 357 72.3
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 1.6e-128 463.4 355 71.5
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.6e-128 463.4 412 65.0
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.6e-128 463.4 412 65.0
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.1e-128 463.0 301 79.4
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 3.6e-128 462.2 316 77.5
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 3.6e-128 462.2 316 77.5
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 7.9e-128 461.1 357 72.0
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 1.0e-127 460.7 302 80.1
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.4e-127 460.3 368 69.8
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.4e-127 460.3 357 71.7
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.8e-127 459.9 370 69.2
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.8e-127 459.9 378 66.9
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 3.0e-127 459.1 346 73.1
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 6.7e-127 458.0 363 70.2
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 6.7e-127 458.0 363 70.2
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.1e-126 457.2 325 76.6
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 2.0e-126 456.4 361 71.2
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 2.6e-126 456.1 359 70.8
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 7.4e-126 454.5 362 69.9
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 9.7e-126 454.1 299 78.9
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.3e-125 453.8 362 69.6
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 1.3e-125 453.8 364 69.0
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.7e-125 453.4 360 72.5
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.2e-125 453.0 364 69.5
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 3.7e-125 452.2 364 70.1
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 4.8e-125 451.8 363 69.1
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 6.3e-125 451.4 315 76.8
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 8.2e-125 451.1 322 76.1
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 8.2e-125 451.1 364 68.7
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.4e-124 450.3 364 68.7
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 1.4e-124 450.3 368 69.0
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 1.8e-124 449.9 360 68.9
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 2.4e-124 449.5 366 69.1
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 3.1e-124 449.1 299 78.6
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 3.1e-124 449.1 361 70.1
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 5.3e-124 448.4 301 78.1
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 5.3e-124 448.4 353 71.4
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 5.3e-124 448.4 294 77.2
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 6.9e-124 448.0 357 68.9
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 9.1e-124 447.6 369 68.3
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 9.1e-124 447.6 366 68.0
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 2.0e-123 446.4 363 69.1
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 2.0e-123 446.4 308 74.7
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 2.6e-123 446.0 362 68.2
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 4.5e-123 445.3 365 68.8
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 4.5e-123 445.3 362 68.2
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 4.5e-123 445.3 364 69.5
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 5.9e-123 444.9 365 69.0
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 5.9e-123 444.9 366 69.1
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.0e-122 444.1 362 68.2
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.9e-121 439.9 350 70.0
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.2e-121 439.1 255 88.2
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 5.5e-121 438.3 255 86.7
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.7e-120 436.0 348 67.5
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 6.1e-120 434.9 369 68.8
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 1.4e-119 433.7 383 64.8
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 2.3e-119 433.0 257 86.0
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 3.9e-119 432.2 360 66.9
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.1e-118 430.6 314 73.9
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.4e-118 428.7 310 72.6
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 7.4e-118 427.9 371 65.2
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 9.7e-118 427.6 338 70.4
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 5.3e-116 421.8 244 88.9
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 5.3e-116 421.8 300 75.7
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 9.1e-116 421.0 309 73.5
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 5.5e-113 411.8 389 60.2
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 5.5e-113 411.8 331 70.1
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 6.1e-112 408.3 279 75.6
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.0e-111 407.5 388 60.6
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 1.5e-110 403.7 310 69.4
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.6e-110 402.9 299 69.9
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.3e-110 402.5 301 73.1
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.3e-109 400.6 363 66.4
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 8.2e-109 397.9 225 89.3
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.6e-107 393.7 274 73.4
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.9e-107 391.7 263 76.8
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 5.0e-106 388.7 361 62.9
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 1.1e-105 387.5 266 74.8
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 3.2e-105 386.0 303 69.3
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 4.7e-104 382.1 241 80.5
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.0e-102 376.7 246 76.4
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 5.0e-98 362.1 252 71.0
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 1.8e-92 343.6 308 64.0
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 4.5e-91 339.0 271 65.3
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.7e-90 337.0 301 64.5
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 3.3e-89 332.8 236 72.5
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 3.0e-87 326.2 333 58.3
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 9.2e-68 261.5 244 61.1
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 5.8e-62 242.3 149 83.2
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 2.9e-61 240.0 149 82.6
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 4.3e-57 226.1 162 72.8
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 4.3e-57 226.1 162 72.8
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 4.8e-48 196.1 108 94.4
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.1e-36 155.6 102 78.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.2e-35 154.8 99 79.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 1.1e-33 148.3 138 61.6
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 6.9e-31 139.0 117 60.7
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 7.9e-27 125.6 102 70.6
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 5.0e-21 106.3 64 87.5
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 4.2e-20 103.2 61 83.6
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 7.7e-06 55.8 51 64.7


User provided reference genes

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