Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 8.9e-118 428.7 212 100.0
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 3.5e-90 337.0 210 81.0
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 5.3e-86 323.2 219 76.3
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 5.8e-77 293.1 209 67.0
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 2.3e-73 281.2 215 65.6
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 3.0e-73 280.8 214 65.9
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 1.9e-72 278.1 209 64.6
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 2.1e-71 274.6 209 63.2
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 2.4e-70 271.2 214 63.1
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 6.9e-70 269.6 212 62.7
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 7.9e-66 256.1 217 61.3
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 9.6e-64 249.2 214 62.1
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 1.6e-63 248.4 183 63.4
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 1.4e-62 245.4 228 57.5
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 6.9e-62 243.0 212 59.9
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 2.6e-61 241.1 220 55.5
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 3.4e-61 240.7 215 59.5
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 7.6e-61 239.6 215 58.6
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.3e-60 238.8 223 57.8
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 4.2e-59 233.8 223 55.6
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 7.2e-59 233.0 214 58.4
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 1.6e-58 231.9 222 55.4
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.8e-57 228.4 223 54.7
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 1.8e-57 228.4 209 60.8
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 1.9e-56 224.9 213 52.6
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 4.8e-55 220.3 219 52.1
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 3.1e-54 217.6 222 55.0
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 2.0e-53 214.9 214 56.1
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 2.9e-52 211.1 214 53.3
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 2.9e-52 211.1 197 52.3
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 5.0e-52 210.3 231 53.7
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 3.9e-49 200.7 211 50.2
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 5.1e-49 200.3 214 50.9
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 2.8e-47 194.5 214 53.7
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 1.4e-46 192.2 235 46.4
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 1.8e-46 191.8 222 49.5
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 4.1e-46 190.7 213 49.3
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 1.2e-45 189.1 225 48.0
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 4.5e-45 187.2 215 47.4
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.0e-44 186.0 214 49.5
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 1.3e-44 185.7 235 44.7
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 9.4e-43 179.5 229 45.4
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 3.6e-42 177.6 212 49.1
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 1.0e-41 176.0 227 46.7
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 3.9e-41 174.1 189 48.7
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 5.2e-41 173.7 160 55.6
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 2.6e-40 171.4 164 51.8
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 4.4e-40 170.6 232 42.7
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 7.4e-40 169.9 212 46.2
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 9.7e-40 169.5 151 54.3
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 1.7e-39 168.7 234 42.3
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 4.8e-39 167.2 143 58.7
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 4.8e-39 167.2 160 51.2
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 6.3e-39 166.8 213 45.5
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 8.2e-39 166.4 163 50.3
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 1.1e-38 166.0 212 46.7
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 1.4e-38 165.6 212 44.8
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 2.0e-37 161.8 213 44.6
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 3.5e-37 161.0 129 60.5
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 5.9e-37 160.2 216 45.4
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 1.0e-36 159.5 211 44.5
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 1.3e-36 159.1 171 50.3
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 1.7e-36 158.7 213 44.1
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 1.7e-36 158.7 196 49.0
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 2.9e-36 157.9 171 49.7
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 2.9e-36 157.9 210 44.8
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 2.9e-36 157.9 144 57.6
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 8.5e-36 156.4 207 45.9
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 1.1e-35 156.0 196 48.0
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 3.2e-35 154.5 209 44.0
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 9.4e-35 152.9 189 47.1
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 9.4e-35 152.9 144 56.2
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 9.4e-35 152.9 140 57.9
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 9.4e-35 152.9 173 48.6
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 1.2e-34 152.5 189 47.1
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 2.7e-34 151.4 221 43.4
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 8.0e-34 149.8 136 56.6
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 5.2e-33 147.1 177 45.8
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 3.1e-30 137.9 132 51.5
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 5.3e-30 137.1 224 37.1
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 2.7e-29 134.8 173 41.6
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 5.0e-28 130.6 75 86.7
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 6.1e-26 123.6 179 36.3
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 2.4e-22 111.7 77 68.8
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 3.6e-18 97.8 132 47.0
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 1.7e-15 89.0 88 51.1
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.7e-13 81.6 79 53.2
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 1.0e-12 79.7 89 48.3
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 1.1e-11 76.3 164 29.3
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.0e-09 69.7 64 53.1
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.3e-09 68.6 59 57.6
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.0e-09 68.2 144 32.6
Oeu048390.1 Olea europaea HOM05D000798 ORTHO05D000659 2.0e-08 65.5 153 31.4
Aqoxy4G02992 Aquilegia oxysepala HOM05D007212 ORTHO05D009094 5.7e-08 63.9 182 27.5
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 2.9e-07 61.6 120 31.7
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 3.7e-07 61.2 135 36.3
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 6.4e-07 60.5 219 23.3
MBI03_g44527_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 8.3e-07 60.1 169 24.3
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 1.1e-06 59.7 188 26.6
TAR633G0773 Trochodendron aralioides HOM05D007212 ORTHO05D009094 1.8e-06 58.9 179 24.0
Thecc.02G296100 Theobroma cacao HOM05D007496 ORTHO05D009479 4.1e-06 57.8 175 25.7
Nn2g10429 Nelumbo nucifera HOM05D007212 ORTHO05D009094 5.4e-06 57.4 147 27.9
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 7.0e-06 57.0 221 24.4
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 9.2e-06 56.6 118 28.8


User provided reference genes

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