Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G241900 Carya illinoinensis HOM05D008114 ORTHO05D010089 3.8e-35 151.0 78 100.0
CiPaw.05G242400 Carya illinoinensis HOM05D008114 ORTHO05D010089 3.8e-35 151.0 78 100.0
CiPaw.06G016700 Carya illinoinensis HOM05D008114 ORTHO05D010089 8.9e-16 86.7 71 71.8
Cfa015838 Carpinus fangiana HOM05D008114 ORTHO05D010089 1.2e-15 86.3 78 67.9
Thecc.02G221900 Theobroma cacao HOM05D008114 ORTHO05D010089 6.3e-14 80.5 78 59.0
Haze_00653 Corylus avellana HOM05D008114 ORTHO05D010089 1.4e-13 79.3 78 65.4
QL93p0145_0019 Quercus lobata HOM05D008114 ORTHO05D010089 1.4e-13 79.3 78 61.5
Atru.chr11.236 Acer truncatum HOM05D008114 ORTHO05D010089 1.8e-13 79.0 78 59.0
Hma1.2p1_1314F.1_g275000 Hydrangea macrophylla HOM05D008114 ORTHO05D010089 2.4e-13 78.6 80 58.8
Hma1.2p1_2306F.1_g319355 Hydrangea macrophylla HOM05D008114 ORTHO05D010089 2.4e-13 78.6 80 58.8
QL01p010819 Quercus lobata HOM05D008114 ORTHO05D010089 4.1e-13 77.8 78 60.3
TAR374G0456 Trochodendron aralioides HOM05D008114 ORTHO05D010089 4.1e-13 77.8 78 56.4
Potri.010G120300 Populus trichocarpa HOM05D008114 ORTHO05D010089 5.4e-13 77.4 78 57.7
Manes.06G065000 Manihot esculenta HOM05D008114 ORTHO05D010089 1.2e-12 76.3 78 53.8
Dinv12222 Davidia involucrata HOM05D008114 ORTHO05D010089 5.0e-11 70.9 75 52.0
TAR371G0741 Trochodendron aralioides HOM05D008114 ORTHO05D010089 1.9e-10 68.9 78 51.3
TAR535G0009 Trochodendron aralioides HOM05D008114 ORTHO05D010089 2.5e-10 68.6 78 50.0
Hma1.2p1_1283F.1_g272780 Hydrangea macrophylla HOM05D008114 ORTHO05D010089 5.6e-10 67.4 79 49.4
RcHm_v2.0_Chr4g0434421 Rosa chinensis HOM05D008114 ORTHO05D010089 1.6e-09 65.9 80 53.8
TAR622G0804 Trochodendron aralioides HOM05D008114 ORTHO05D010089 1.6e-09 65.9 78 52.6
TAR622G1122 Trochodendron aralioides HOM05D008114 ORTHO05D010089 1.6e-09 65.9 78 52.6
Manes.14G106800 Manihot esculenta HOM05D008114 ORTHO05D010089 2.1e-09 65.5 74 51.4
TAR426G0004 Trochodendron aralioides HOM05D008114 ORTHO05D010089 2.8e-09 65.1 78 48.7
FAN12G0147 Fragaria x ananassa HOM05D008114 ORTHO05D010089 6.2e-09 63.9 81 51.9
FAN17G1195 Fragaria x ananassa HOM05D008114 ORTHO05D010089 6.2e-09 63.9 81 50.6
FAN08G3365 Fragaria x ananassa HOM05D008114 ORTHO05D010089 1.4e-08 62.8 55 56.4
FAN18G3335 Fragaria x ananassa HOM05D008114 ORTHO05D010089 1.4e-08 62.8 52 57.7
FAN04G2580 Fragaria x ananassa HOM05D008114 ORTHO05D010089 1.8e-08 62.4 55 58.2
FAN22G0519 Fragaria x ananassa HOM05D008114 ORTHO05D010089 1.8e-08 62.4 81 49.4
CSS0031808 Camellia sinensis var. sinensis HOM05D008114 ORTHO05D010089 2.3e-08 62.0 74 51.4
Cfa019734 Carpinus fangiana HOM05D008114 ORTHO05D010089 3.1e-08 61.6 54 64.8
CSS0047992 Camellia sinensis var. sinensis HOM05D008114 ORTHO05D010089 5.2e-08 60.8 64 53.1
Ciclev10017364m.g Citrus clementina HOM05D008114 ORTHO05D010089 5.2e-08 60.8 83 49.4
QL10p026513 Quercus lobata HOM05D008114 ORTHO05D010089 5.2e-08 60.8 72 52.8
CiPaw.16G088900 Carya illinoinensis HOM05D008114 ORTHO05D010089 6.8e-08 60.5 55 56.4
FAN07G1623 Fragaria x ananassa HOM05D008114 ORTHO05D010089 6.8e-08 60.5 81 49.4
Haze_18729 Corylus avellana HOM05D008114 ORTHO05D010089 8.9e-08 60.1 54 61.1
Lalb_Chr06g0165841 Lupinus albus HOM05D021627 ORTHO05D021511 8.9e-08 60.1 83 48.2
Lsat_1_v5_gn_8_41420 Lactuca sativa HOM05D008114 ORTHO05D010089 1.5e-07 59.3 74 45.9
Gohir.D12G146500 Gossypium hirsutum HOM05D008114 ORTHO05D010089 2.0e-07 58.9 55 61.8
Prupe.5G224700 Prunus persica HOM05D008114 ORTHO05D010089 2.6e-07 58.5 79 45.6
Duzib205G1811 Durio zibethinus HOM05D008114 ORTHO05D010089 3.4e-07 58.2 70 47.1
THA.LOC104809237 Tarenaya hassleriana HOM05D013984 ORTHO05D010089 3.4e-07 58.2 53 56.6
Thecc.03G040900 Theobroma cacao HOM05D008114 ORTHO05D010089 3.4e-07 58.2 74 50.0
Aa31LG4G11900 Aethionema arabicum HOM05D013984 ORTHO05D010089 4.4e-07 57.8 55 54.5
MELO3C012274.2 Cucumis melo HOM05D022275 ORTHO05D010089 4.4e-07 57.8 60 50.0
CsaV3_5G034590 Cucumis sativus L. HOM05D022275 ORTHO05D010089 4.4e-07 57.8 60 50.0
Rhsim12G0141700 Rhododendron simsii HOM05D008114 ORTHO05D010089 5.8e-07 57.4 79 45.6
CSS0032238 Camellia sinensis var. sinensis HOM05D008114 ORTHO05D010089 7.5e-07 57.0 78 46.2
Gorai.008G157800 Gossypium raimondii HOM05D008114 ORTHO05D010089 7.5e-07 57.0 55 58.2
Sed0006257 Sechium edule HOM05D022275 ORTHO05D010089 7.5e-07 57.0 70 44.3
Gohir.A12G141700 Gossypium hirsutum HOM05D008114 ORTHO05D010089 1.3e-06 56.2 54 59.3
COL.COLO4_32149 Corchorus olitorius HOM05D008114 ORTHO05D010089 1.7e-06 55.8 79 48.1
Potri.012G054000 Populus trichocarpa HOM05D008114 ORTHO05D010089 4.9e-06 54.3 78 41.0
Cc11_g09680 Coffea canephora HOM05D008114 ORTHO05D010089 6.4e-06 53.9 80 41.2


User provided reference genes

Program Settings