Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 5.1e-262 907.1 435 100.0
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 2.7e-199 698.7 434 77.0
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.0e-165 586.3 443 65.0
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 7.1e-163 577.8 368 75.0
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.5e-160 570.1 440 65.2
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.5e-160 569.3 443 63.2
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.3e-160 567.8 443 63.2
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 3.2e-155 552.4 440 64.1
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.2e-154 550.4 436 64.0
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 2.1e-154 549.7 433 64.9
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 1.0e-153 547.4 396 71.2
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 8.7e-153 544.3 390 68.2
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 6.2e-151 538.1 427 66.3
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 9.9e-149 530.8 413 65.6
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.3e-148 530.4 440 62.3
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.9e-148 529.3 384 67.7
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 4.9e-148 528.5 443 61.9
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.1e-147 527.3 412 64.8
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 3.2e-147 525.8 351 73.2
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.1e-144 517.3 417 64.3
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 4.3e-144 515.4 444 58.3
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 9.0e-142 507.7 435 57.9
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 5.8e-141 505.0 437 59.7
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.3e-140 503.8 344 72.7
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.8e-140 502.3 462 61.9
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 8.4e-140 501.1 331 72.5
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 1.4e-139 500.4 438 59.8
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 1.2e-138 497.3 359 69.1
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.0e-138 495.0 360 67.5
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.9e-138 494.6 363 66.7
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.3e-137 493.0 361 66.8
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.9e-137 492.3 401 61.8
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.8e-135 486.1 333 72.1
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 2.8e-135 486.1 332 72.3
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 3.7e-135 485.7 364 66.8
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.7e-135 485.7 366 65.6
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 6.2e-135 485.0 386 65.3
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 8.1e-135 484.6 354 65.8
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 4.0e-134 482.3 339 69.9
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 6.9e-134 481.5 323 71.5
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 9.0e-134 481.1 343 70.3
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 9.0e-134 481.1 342 69.6
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.3e-132 477.2 323 71.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.9e-132 476.1 332 69.0
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 6.4e-132 474.9 354 68.1
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.4e-131 473.8 371 65.5
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.4e-131 473.8 331 69.2
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.5e-131 473.0 343 68.8
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 5.5e-131 471.9 370 64.9
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 3.5e-130 469.2 374 62.6
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 6.0e-130 468.4 335 68.4
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 7.9e-130 468.0 308 72.7
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.3e-129 467.2 346 66.8
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 3.0e-129 466.1 375 62.7
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 3.0e-129 466.1 344 66.6
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.9e-129 465.7 328 69.2
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.9e-129 465.7 333 70.3
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 8.7e-129 464.5 339 67.3
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 1.1e-128 464.2 345 66.4
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 3.3e-128 462.6 347 65.1
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 1.3e-127 460.7 318 69.2
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 2.8e-127 459.5 323 69.0
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 4.8e-127 458.8 321 68.5
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 4.8e-127 458.8 396 60.6
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.4e-126 457.2 362 63.5
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 3.1e-126 456.1 318 69.8
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 3.1e-126 456.1 318 69.8
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 3.1e-126 456.1 318 69.8
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 4.0e-126 455.7 318 70.4
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 4.0e-126 455.7 430 57.0
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 5.3e-126 455.3 399 59.1
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 9.0e-126 454.5 335 66.9
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 3.8e-124 449.1 320 67.2
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 9.3e-123 444.5 350 65.1
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.6e-122 443.7 389 59.4
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 3.5e-122 442.6 319 68.7
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 6.1e-122 441.8 433 54.0
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 2.2e-119 433.3 340 64.4
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.1e-118 431.0 246 81.7
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.4e-118 430.6 330 63.0
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.4e-118 430.6 333 64.9
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.8e-118 430.3 388 58.5
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.1e-118 429.1 331 64.4
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 2.2e-116 423.3 411 55.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 3.9e-113 412.5 343 61.8
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 4.3e-112 409.1 327 62.4
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 6.3e-111 405.2 296 66.9
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.6e-109 399.8 320 62.5
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 3.4e-109 399.4 322 63.4
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.7e-108 397.1 391 55.8
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 5.0e-108 395.6 336 61.6
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.1e-107 394.4 301 68.4
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 5.7e-104 382.1 316 62.7
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 1.0e-100 371.3 325 56.3
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.1e-98 363.6 236 71.2
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 3.3e-96 356.3 231 72.3
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 9.7e-96 354.8 192 83.3
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.8e-94 350.5 264 65.5
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 6.1e-90 335.5 354 50.0
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.7e-85 320.1 193 78.2
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.5e-85 319.7 334 50.9
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.9e-83 313.9 282 55.0
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 9.5e-75 285.0 269 51.3
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 4.0e-73 279.6 350 42.3
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.9e-67 260.8 196 58.7
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 8.0e-66 255.4 227 54.2
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 5.8e-64 249.2 304 48.0
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 3.0e-60 236.9 123 86.2
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 4.7e-58 229.6 223 54.7
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.6e-56 223.8 221 56.6
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.7e-55 221.1 248 50.8
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 2.2e-55 220.7 125 75.2
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 8.6e-52 208.8 114 86.8
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 1.2e-48 198.4 112 83.9
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.5e-40 171.4 173 56.1
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.9e-38 164.5 270 39.3
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 9.3e-38 162.2 174 54.0
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 5.1e-36 156.4 97 75.3
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.1e-35 155.2 248 40.7
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 7.3e-35 152.5 296 37.8
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 1.8e-33 147.9 218 43.6
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 4.4e-32 143.3 180 41.1
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 4.6e-29 133.3 177 42.9
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.5e-27 128.3 61 90.2
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.8e-25 121.3 344 26.5
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 2.4e-25 120.9 73 78.1
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 1.5e-24 118.2 98 61.2
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 4.5e-24 116.7 61 93.4
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 6.0e-21 106.3 63 81.0
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 2.3e-20 104.4 55 76.4
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.1e-19 102.1 190 39.5
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.8e-18 97.4 78 60.3
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 5.3e-17 93.2 118 43.2
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 3.9e-12 77.0 217 30.4
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.1e-09 67.4 40 77.5
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 7.6e-08 62.8 69 49.3


User provided reference genes

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