Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 1.2e-36 156.0 78 100.0
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 1.0e-27 126.3 78 82.1
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 2.5e-26 121.7 74 81.1
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 3.6e-25 117.9 78 79.5
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 4.7e-25 117.5 78 80.8
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 1.0e-24 116.3 78 76.9
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 1.4e-24 115.9 78 75.6
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.8e-24 115.5 78 75.6
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.8e-24 115.5 78 75.6
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 3.0e-24 114.8 78 75.6
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 5.2e-24 114.0 78 71.8
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 5.2e-24 114.0 72 77.8
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 6.8e-24 113.6 81 71.6
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 8.8e-24 113.2 78 73.1
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 8.8e-24 113.2 78 71.8
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 1.5e-23 112.5 78 71.8
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 1.5e-23 112.5 78 75.6
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 1.5e-23 112.5 78 73.1
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 2.0e-23 112.1 78 74.4
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 4.4e-23 110.9 78 70.5
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 7.5e-23 110.2 83 69.9
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 7.5e-23 110.2 78 71.8
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 7.5e-23 110.2 78 71.8
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 2.2e-22 108.6 78 70.5
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 2.8e-22 108.2 78 69.2
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 3.7e-22 107.8 78 71.8
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 3.7e-22 107.8 78 70.5
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 6.3e-22 107.1 77 71.4
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 6.3e-22 107.1 80 68.8
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 1.1e-21 106.3 75 73.3
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 1.1e-21 106.3 81 66.7
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.8e-21 105.5 78 70.5
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 2.4e-21 105.1 78 67.9
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 3.1e-21 104.8 78 70.5
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 4.1e-21 104.4 75 72.0
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 5.4e-21 104.0 78 70.5
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 5.4e-21 104.0 78 65.4
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 7.0e-21 103.6 83 67.5
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 9.1e-21 103.2 75 72.0
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 9.1e-21 103.2 81 70.4
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 1.2e-20 102.8 80 70.0
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 1.6e-20 102.4 80 66.2
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 2.0e-20 102.1 88 61.4
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 2.7e-20 101.7 78 66.7
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 2.7e-20 101.7 79 69.6
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 2.7e-20 101.7 79 69.6
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 3.5e-20 101.3 82 65.9
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 3.5e-20 101.3 82 65.9
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 4.5e-20 100.9 77 67.5
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 5.9e-20 100.5 72 69.4
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 7.7e-20 100.1 80 67.5
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 2.9e-19 98.2 81 65.4
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 2.9e-19 98.2 77 64.9
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 6.6e-19 97.1 78 65.4
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 6.6e-19 97.1 82 67.1
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 6.6e-19 97.1 76 68.4
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 6.6e-19 97.1 62 72.6
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 8.6e-19 96.7 83 63.9
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 1.1e-18 96.3 78 64.1
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 1.1e-18 96.3 80 66.2
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 1.5e-18 95.9 78 61.5
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 1.5e-18 95.9 65 72.3
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 1.5e-18 95.9 80 66.2
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.9e-18 95.5 76 67.1
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 3.3e-18 94.7 75 61.3
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 3.3e-18 94.7 75 61.3
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 3.3e-18 94.7 116 50.0
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 4.2e-18 94.4 79 62.0
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 7.2e-18 93.6 101 54.5
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 9.5e-18 93.2 75 61.3
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 9.5e-18 93.2 78 62.8
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 1.2e-17 92.8 66 71.2
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 3.6e-17 91.3 75 62.7
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 3.6e-17 91.3 75 62.7
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 3.6e-17 91.3 75 62.7
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 3.6e-17 91.3 74 63.5
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 1.0e-16 89.7 78 61.5
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 1.4e-16 89.4 54 75.9
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 1.8e-16 89.0 67 65.7
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 2.3e-16 88.6 59 72.9
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 8.9e-16 86.7 89 55.1
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 1.2e-15 86.3 57 66.7
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 2.0e-15 85.5 78 57.7
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 2.0e-15 85.5 67 64.2
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 9.8e-15 83.2 122 44.3
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 2.2e-14 82.0 78 57.7
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 6.3e-14 80.5 62 64.5
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 1.8e-13 79.0 75 54.7
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 4.6e-12 74.3 46 78.3
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 3.3e-10 68.2 42 81.0
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 5.6e-10 67.4 78 52.6
MBI02_g20368_MAGBIO Magnolia biondii HOM05D007703 ORTHO05D009731 4.4e-07 57.8 37 73.0


User provided reference genes

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