Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 9.5e-181 636.7 323 100.0
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 8.4e-153 543.9 330 83.9
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 6.0e-151 537.7 329 82.7
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 4.1e-115 418.7 310 69.7
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 6.9e-115 417.9 313 69.0
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 2.9e-113 412.5 310 68.7
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 6.5e-113 411.4 310 69.0
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 1.2e-111 407.1 325 65.8
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.6e-111 406.8 311 66.9
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 2.7e-111 406.0 328 65.5
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 3.6e-111 405.6 308 68.2
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 4.7e-111 405.2 315 65.7
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 5.2e-110 401.7 328 66.2
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 6.7e-110 401.4 309 68.3
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.1e-109 400.6 309 68.3
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 2.0e-109 399.8 311 66.6
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 2.6e-109 399.4 308 69.2
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.6e-109 399.4 309 68.0
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.7e-109 398.3 310 67.4
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 5.7e-109 398.3 311 67.5
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 7.4e-109 397.9 324 64.8
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 9.7e-109 397.5 311 68.2
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 2.2e-108 396.4 328 63.1
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 1.1e-107 394.0 315 66.0
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 1.8e-107 393.3 312 67.3
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 2.4e-107 392.9 310 65.5
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.1e-107 392.5 328 65.2
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 4.1e-107 392.1 311 66.6
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 4.1e-107 392.1 310 65.2
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 2.6e-106 389.4 310 65.2
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 4.5e-106 388.7 311 66.6
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 8.5e-105 384.4 312 66.7
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 1.1e-104 384.0 295 67.1
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.1e-104 384.0 310 65.2
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.1e-104 384.0 311 64.3
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 1.5e-104 383.6 310 66.5
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 2.5e-104 382.9 316 64.6
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 4.2e-104 382.1 322 62.1
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.5e-104 381.7 310 65.8
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 2.1e-103 379.8 308 64.3
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.7e-103 379.4 322 61.8
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 2.7e-103 379.4 314 63.7
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 8.0e-103 377.9 308 63.6
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 8.0e-103 377.9 308 63.3
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 2.3e-102 376.3 310 63.2
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 5.2e-102 375.2 366 57.9
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 7.5e-101 371.3 318 63.2
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 7.5e-101 371.3 313 61.7
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 1.3e-100 370.5 308 63.0
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.8e-100 369.4 320 60.3
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 4.8e-100 368.6 329 58.7
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 4.8e-100 368.6 315 61.6
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 2.4e-99 366.3 339 58.7
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 3.1e-99 365.9 311 64.0
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 7.0e-99 364.8 306 63.7
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 1.2e-98 364.0 310 62.6
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 2.7e-98 362.8 307 62.9
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 7.7e-98 361.3 372 53.8
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 7.7e-98 361.3 318 60.4
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 1.3e-97 360.5 303 62.4
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.3e-97 360.5 303 62.4
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 2.2e-97 359.8 307 62.5
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 1.5e-96 357.1 380 53.9
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.9e-96 356.7 349 57.6
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 3.2e-96 355.9 313 61.7
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 3.2e-96 355.9 325 58.2
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 9.4e-96 354.4 312 59.3
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 3.6e-95 352.4 305 61.0
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 3.6e-95 352.4 318 59.7
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 2.3e-94 349.7 295 62.0
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 5.2e-94 348.6 329 58.7
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 8.8e-94 347.8 311 60.5
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.0e-93 346.7 329 56.2
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 2.6e-93 346.3 308 59.4
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 4.4e-93 345.5 312 59.0
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 4.8e-92 342.0 297 59.6
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 8.3e-92 341.3 306 61.1
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.4e-91 340.5 325 58.5
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 2.4e-91 339.7 309 58.3
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 2.4e-91 339.7 309 59.9
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 3.1e-91 339.3 306 60.1
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 5.4e-91 338.6 303 59.7
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 7.0e-91 338.2 306 60.5
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 9.1e-91 337.8 303 60.1
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.6e-90 337.0 306 60.1
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.6e-90 337.0 306 60.1
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.6e-90 337.0 306 60.1
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.6e-90 337.0 312 57.7
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 4.5e-90 335.5 305 60.0
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.3e-89 334.0 309 58.3
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 3.8e-89 332.4 305 59.0
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.5e-88 330.5 308 58.8
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.5e-88 330.5 308 58.8
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.5e-88 330.5 306 58.2
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 9.5e-88 327.8 310 55.8
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 1.6e-87 327.0 259 66.8
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 4.7e-87 325.5 318 55.3
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 6.1e-87 325.1 308 60.1
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 8.9e-86 321.2 320 55.0
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 2.0e-85 320.1 321 55.1
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 8.3e-84 314.7 322 55.6
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 3.1e-83 312.8 266 62.4
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 7.0e-83 311.6 257 64.6
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.5e-80 303.9 323 55.1
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.2e-77 294.3 295 56.9
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.2e-77 294.3 318 55.7
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 2.2e-76 290.0 261 61.3
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.2e-75 286.2 346 51.4
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 9.2e-75 284.6 311 52.7
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.2e-74 284.3 198 73.7
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 2.0e-74 283.5 219 69.4
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.4e-70 270.8 303 51.8
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 1.7e-65 253.8 268 53.0
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 3.0e-65 253.1 313 48.9
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.2e-63 247.7 293 49.5
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 5.2e-62 242.3 313 46.0
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 6.4e-60 235.3 306 44.8
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 3.9e-57 226.1 121 95.9
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 4.9e-52 209.1 310 42.6
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 1.9e-48 197.2 110 91.8
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 4.4e-45 186.0 325 37.2
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 2.1e-39 167.2 110 75.5
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 1.4e-38 164.5 173 49.1
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.5e-37 161.0 257 42.4
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 2.0e-37 160.6 154 57.8
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 4.9e-36 156.0 105 73.3
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 3.0e-33 146.7 166 51.2
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 2.3e-25 120.6 249 34.5
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 2.1e-23 114.0 80 72.5
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.3e-20 104.8 97 54.6
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.9e-19 100.9 360 28.6
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 2.2e-15 87.4 46 93.5
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 2.2e-15 87.4 46 93.5
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 2.2e-15 87.4 46 93.5
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.1e-14 85.1 95 53.7
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 2.4e-14 84.0 70 62.9
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 3.1e-14 83.6 45 91.1
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 4.1e-14 83.2 92 48.9
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 5.3e-14 82.8 53 77.4
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 2.0e-13 80.9 54 72.2
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 5.1e-09 66.2 51 70.6
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 2.5e-08 63.9 53 58.5
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 9.7e-08 62.0 79 43.0
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 9.1e-06 55.5 36 72.2


User provided reference genes

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