Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 3.0e-232 808.1 407 100.0
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 6.3e-198 694.1 407 85.5
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.4e-165 586.6 409 74.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 3.2e-165 585.5 376 78.5
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 2.1e-164 582.8 409 73.3
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.5e-162 576.6 411 73.5
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.9e-162 576.2 361 80.1
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 3.3e-162 575.5 415 73.5
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 4.0e-160 568.5 359 80.2
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.6e-159 565.8 414 71.5
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.4e-157 560.1 415 70.1
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.2e-156 557.0 398 69.8
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 3.0e-155 552.4 401 71.8
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 2.8e-153 545.8 412 68.2
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.1e-152 542.3 407 69.8
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 5.2e-152 541.6 417 68.1
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 5.2e-152 541.6 419 68.7
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 5.2e-152 541.6 376 73.1
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.9e-152 541.2 409 69.4
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.0e-152 540.8 419 68.7
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.2e-151 540.4 415 68.2
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 5.8e-151 538.1 435 67.4
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.3e-150 537.0 395 67.3
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 4.9e-150 535.0 380 71.8
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 3.2e-149 532.3 383 69.7
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 4.2e-149 531.9 341 77.4
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 5.4e-149 531.6 374 70.9
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 7.1e-149 531.2 341 76.5
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.1e-148 529.6 341 77.4
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 1.0e-147 527.3 358 77.9
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.3e-147 526.2 358 73.2
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 7.3e-146 521.2 409 66.7
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.6e-145 520.0 398 66.6
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.6e-145 520.0 350 71.7
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.1e-145 519.6 391 67.0
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 6.2e-145 518.1 417 67.6
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 6.2e-145 518.1 393 66.2
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 6.2e-145 518.1 393 66.2
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 8.1e-145 517.7 338 74.9
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.1e-144 517.3 333 76.3
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.8e-144 516.5 369 69.1
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.8e-144 516.5 393 66.2
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 2.4e-144 516.2 361 72.6
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 2.0e-143 513.1 346 71.7
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 3.4e-143 512.3 343 74.9
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 5.8e-143 511.5 397 65.7
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 9.9e-143 510.8 346 71.1
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 9.9e-143 510.8 369 68.0
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.7e-142 510.0 379 67.0
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 2.2e-142 509.6 349 71.1
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.8e-142 508.8 340 73.2
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 6.4e-142 508.1 402 63.9
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 8.4e-142 507.7 359 71.3
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 8.4e-142 507.7 383 68.9
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.4e-141 506.9 377 68.4
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.9e-141 506.5 389 68.4
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.6e-140 503.4 345 70.4
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.6e-140 503.4 345 75.4
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.6e-140 503.4 356 70.2
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.6e-140 503.4 346 71.1
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.7e-140 502.7 370 69.5
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.5e-140 502.3 366 70.2
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 6.0e-140 501.5 387 65.9
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 7.9e-140 501.1 370 69.2
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 5.1e-139 498.4 356 66.9
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 7.4e-138 494.6 421 61.8
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.6e-137 493.4 339 71.1
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.6e-137 493.4 354 67.8
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 3.7e-137 492.3 401 64.3
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 3.7e-137 492.3 401 64.3
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.7e-137 492.3 355 67.9
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 3.7e-137 492.3 345 69.9
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 6.2e-137 491.5 338 71.9
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 6.2e-137 491.5 338 71.6
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 6.2e-137 491.5 353 68.3
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 8.1e-137 491.1 349 70.5
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.8e-136 490.0 334 74.3
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.4e-136 489.6 338 71.6
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.1e-136 489.2 338 71.6
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 4.0e-136 488.8 344 67.4
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.0e-135 486.5 336 70.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.8e-135 485.0 338 68.6
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 9.9e-135 484.2 420 60.2
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.7e-134 483.4 325 70.8
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 3.8e-134 482.3 376 62.8
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 8.4e-134 481.1 413 62.5
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 3.2e-133 479.2 327 71.9
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.6e-132 476.9 329 71.1
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 6.0e-132 474.9 329 71.1
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 1.3e-131 473.8 329 70.8
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.8e-131 473.4 329 70.5
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.8e-131 473.4 329 70.5
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.3e-131 473.0 396 61.9
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.6e-130 468.4 411 57.7
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 7.4e-130 468.0 421 61.8
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 9.6e-130 467.6 387 59.2
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.8e-129 466.1 418 56.9
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 6.5e-126 454.9 346 70.2
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.2e-124 450.7 346 70.2
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.1e-122 444.1 600 45.2
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 9.7e-122 441.0 341 61.3
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 5.3e-120 435.3 351 63.8
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 6.9e-120 434.9 302 70.9
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 3.8e-118 429.1 269 77.3
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 1.1e-117 427.6 358 59.8
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 5.5e-117 425.2 272 77.6
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.6e-116 422.2 270 76.3
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 7.9e-116 421.4 351 59.5
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.4e-112 410.6 324 60.8
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 4.4e-106 389.0 299 64.5
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.8e-104 383.6 261 71.6
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 2.0e-95 353.6 346 53.2
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.6e-95 353.2 353 49.3
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.3e-94 350.9 321 52.3
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 8.5e-94 348.2 307 62.2
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.8e-91 340.5 218 75.7
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 5.7e-90 335.5 346 48.6
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 8.3e-89 331.6 316 50.9
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.6e-87 327.4 271 62.7
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.7e-87 326.6 220 66.8
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.0e-86 324.7 317 49.8
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.3e-81 307.8 700 34.0
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 4.5e-79 299.3 173 82.7
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.7e-76 289.3 265 61.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 8.3e-73 278.5 198 70.2
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.1e-72 278.1 266 52.3
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 6.6e-70 268.9 264 56.8
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.3e-62 244.6 245 51.4
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 7.8e-55 218.8 224 54.9
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 6.6e-46 189.1 117 72.6
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.5e-45 187.2 145 64.8
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 4.2e-40 169.9 303 36.3
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-37 161.8 150 52.0
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.8e-36 157.1 328 32.3
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 5.3e-35 152.9 93 75.3
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.4e-32 144.8 130 61.5
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 2.5e-29 134.0 294 31.3
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 5.1e-22 109.8 97 48.5
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.7e-17 94.7 81 61.7
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 2.9e-17 94.0 89 50.6
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 6.7e-14 82.8 48 77.1
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 7.4e-13 79.3 188 27.1


User provided reference genes

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