Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 3.0e-268 927.9 465 100.0
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.1e-222 776.5 464 83.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.9e-222 775.8 456 82.9
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.0e-220 770.0 464 82.8
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 6.7e-220 767.3 456 82.0
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 2.6e-219 765.4 456 81.8
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 2.2e-218 762.3 456 81.6
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.5e-216 754.6 462 80.3
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 5.9e-216 754.2 461 80.0
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 3.8e-215 751.5 464 80.8
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 8.5e-215 750.4 465 79.8
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 4.2e-214 748.0 459 81.0
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 7.2e-214 747.3 455 80.2
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.7e-213 745.3 462 79.2
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 4.7e-213 744.6 463 80.8
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.8e-212 742.7 460 79.1
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 6.7e-212 740.7 461 79.0
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 8.8e-212 740.3 460 79.3
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.2e-210 735.7 461 79.0
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.8e-210 734.6 460 79.3
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.8e-210 734.6 460 79.3
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 6.3e-210 734.2 457 79.6
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.4e-209 733.0 459 78.6
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.4e-209 732.3 461 77.7
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 4.1e-209 731.5 460 78.7
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.2e-208 729.9 456 78.1
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.6e-208 729.6 483 76.2
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.0e-208 729.2 463 77.8
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.6e-208 728.8 460 78.5
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.6e-208 728.8 460 78.5
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 3.5e-208 728.4 460 78.7
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.5e-208 728.0 451 80.5
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 4.5e-208 728.0 451 80.5
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 7.7e-208 727.2 464 77.2
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.0e-207 726.9 461 77.2
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.7e-207 726.1 461 77.9
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.0e-207 724.5 452 79.6
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 6.5e-207 724.2 451 79.4
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.1e-206 723.4 449 79.3
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.5e-206 722.2 447 78.3
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 3.2e-206 721.8 457 77.2
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.2e-206 720.7 460 78.0
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.2e-205 719.9 447 78.3
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.2e-205 719.9 462 78.1
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.6e-205 719.5 456 76.8
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 2.7e-205 718.8 457 77.9
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.7e-205 718.0 451 78.3
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 6.1e-205 717.6 453 77.0
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 8.0e-205 717.2 461 77.7
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 1.8e-204 716.1 445 78.7
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 5.2e-204 714.5 462 76.8
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.5e-203 713.0 454 76.4
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.5e-203 713.0 453 77.3
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.0e-203 712.6 453 76.4
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 5.7e-203 711.1 457 76.6
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 7.5e-203 710.7 457 77.2
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 9.8e-203 710.3 458 77.5
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.7e-202 709.5 457 76.6
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 6.3e-202 707.6 456 75.4
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 8.3e-202 707.2 451 76.5
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.7e-200 702.2 446 77.6
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 7.7e-200 700.7 447 74.9
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 1.0e-199 700.3 459 75.2
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.9e-199 698.7 462 75.3
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 6.5e-199 697.6 427 79.2
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 6.5e-199 697.6 427 79.2
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.1e-198 696.8 459 74.7
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.5e-198 695.7 465 73.8
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 5.5e-198 694.5 462 75.1
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 7.2e-198 694.1 464 75.4
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.6e-197 693.0 426 79.6
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.6e-197 693.0 457 74.0
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.1e-197 692.6 452 76.1
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.1e-197 692.6 448 77.2
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 2.1e-197 692.6 460 75.0
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.7e-197 692.2 461 75.3
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 2.7e-197 692.2 455 75.4
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-196 689.9 450 76.7
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.0e-196 688.7 451 76.1
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 3.0e-196 688.7 453 74.8
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 5.2e-196 688.0 459 75.2
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 5.2e-196 688.0 464 74.8
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 6.8e-196 687.6 470 72.6
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 6.8e-196 687.6 454 75.6
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 6.8e-196 687.6 453 73.3
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 8.8e-196 687.2 437 77.6
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 2.0e-195 686.0 445 76.4
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 3.4e-195 685.3 454 76.2
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 4.4e-195 684.9 432 77.1
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 6.3e-194 681.0 436 76.6
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 6.3e-194 681.0 453 74.8
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 6.3e-194 681.0 443 74.3
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 8.3e-194 680.6 436 75.7
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.1e-193 680.2 438 77.6
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.4e-193 679.9 441 75.7
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.8e-193 679.5 459 74.9
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 7.0e-193 677.6 447 75.6
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.2e-192 676.8 459 74.3
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.2e-192 676.8 413 80.9
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 3.8e-191 671.8 445 74.6
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 8.6e-191 670.6 446 75.1
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 8.6e-191 670.6 446 74.0
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.5e-190 669.8 430 76.5
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 7.2e-190 667.5 451 73.4
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.2e-190 667.5 412 78.2
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 7.2e-190 667.5 462 72.3
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.1e-189 666.0 430 74.9
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 2.8e-189 665.6 440 73.4
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 2.8e-189 665.6 439 73.6
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.4e-188 663.3 442 73.5
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 5.2e-188 661.4 441 73.5
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 5.2e-188 661.4 441 73.5
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 8.9e-188 660.6 430 74.4
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.0e-187 659.4 432 74.1
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 2.6e-187 659.1 430 75.6
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 3.4e-187 658.7 438 73.1
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 4.4e-187 658.3 445 72.4
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 4.9e-186 654.8 464 70.9
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 6.3e-186 654.4 447 70.9
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 6.3e-186 654.4 428 74.8
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.4e-185 653.3 430 74.2
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 2.4e-185 652.5 428 74.5
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 5.4e-185 651.4 425 74.8
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.0e-185 651.0 454 70.5
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 9.2e-185 650.6 407 78.6
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.6e-184 649.8 407 78.6
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.0e-184 649.4 457 70.0
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.3e-183 646.7 452 71.0
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.5e-182 643.3 445 71.9
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 3.3e-182 642.1 389 80.2
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 5.6e-182 641.3 445 71.9
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 7.3e-182 641.0 463 70.2
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.2e-181 640.2 455 70.1
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 3.6e-181 638.6 388 79.9
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.6e-179 632.5 442 71.5
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 9.2e-177 624.0 383 79.1
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.7e-175 619.8 450 67.3
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 8.6e-175 617.5 461 68.3
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 5.2e-172 608.2 364 79.9
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 8.9e-172 607.4 388 76.5
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 8.9e-172 607.4 466 64.4
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.2e-171 607.1 372 80.4
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 7.8e-168 594.3 456 66.9
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.9e-162 575.9 384 75.0
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.4e-147 525.8 429 62.2
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.2e-145 519.2 464 60.6
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 2.7e-144 516.2 420 61.2
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.6e-139 499.6 428 59.1
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.0e-131 473.4 463 55.5
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.4e-131 472.6 436 55.7
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.2e-120 437.6 311 69.1
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.1e-116 424.5 287 73.5
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 7.2e-113 411.8 436 49.8
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.7e-106 390.6 237 78.1
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 2.1e-104 383.6 230 80.0
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.7e-101 374.0 270 69.3
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.4e-100 370.9 430 45.6
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 9.4e-97 358.2 401 47.4
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.3e-95 353.6 449 43.7
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.6e-80 304.3 272 62.5
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 1.0e-71 275.0 163 82.2
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 9.5e-57 225.3 149 76.5
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 6.8e-47 192.6 113 80.5
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.9e-45 187.2 126 70.6
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.7e-42 177.9 453 31.1
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.1e-39 167.2 93 81.7
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.6e-35 154.8 439 29.6
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 9.0e-23 112.5 124 53.2
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 9.0e-23 112.5 78 73.1
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 1.7e-13 81.6 61 65.6
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.4e-12 78.6 79 54.4
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.5e-09 67.8 199 29.1
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 2.5e-09 67.8 193 29.0
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.4e-07 62.0 197 25.4
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 2.4e-07 61.2 196 26.0
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 3.1e-07 60.8 198 26.8
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 6.9e-07 59.7 198 25.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.2e-06 58.9 202 26.2
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.5e-06 58.5 107 28.0
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.5e-06 58.5 202 26.2
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.5e-06 58.5 194 25.8
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.0e-06 58.2 147 27.2
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.6e-06 57.8 194 25.3
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 3.4e-06 57.4 208 24.0
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.5e-06 57.0 147 29.3


User provided reference genes

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