Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 0.0e+00 2442.5 1213 100.0
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 0.0e+00 1410.2 1209 63.6
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 0.0e+00 1352.0 1209 62.0
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 0.0e+00 1313.5 1218 58.9
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 1.9e-197 694.1 1298 39.4
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 4.0e-179 633.3 1263 37.1
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 4.5e-175 619.8 1258 37.7
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.5e-173 612.8 1255 37.8
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.2e-173 612.5 1264 37.7
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 4.2e-165 586.6 1228 35.9
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.1e-164 584.3 1260 36.7
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 3.4e-162 577.0 1262 35.8
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 4.4e-162 576.6 1263 35.0
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 6.3e-161 572.8 1295 35.2
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.5e-159 566.6 1305 34.6
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.3e-158 564.3 513 59.6
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 2.9e-158 563.9 1261 34.7
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 5.0e-158 563.1 1121 37.5
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.9e-145 520.8 1341 32.8
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.2e-143 515.4 1327 33.5
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 5.0e-142 510.0 1288 33.2
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 2.8e-140 504.2 1224 33.7
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 8.1e-140 502.7 1232 34.4
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.2e-138 498.8 995 38.0
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 6.0e-135 486.5 1287 32.9
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.8e-131 474.9 1240 33.6
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.0e-131 473.8 1288 32.1
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 2.0e-130 471.5 1200 32.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 9.9e-130 469.2 1230 33.0
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.4e-123 448.0 1234 33.4
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 3.4e-122 444.1 913 36.6
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.4e-122 443.7 1269 33.3
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.1e-120 439.1 1237 32.7
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.7e-118 431.8 1221 31.2
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.2e-116 423.3 949 37.4
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.5e-114 418.7 1173 31.8
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 4.3e-109 400.6 1222 30.0
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.8e-108 397.9 1223 30.3
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.2e-90 339.3 1224 28.9
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.7e-87 328.2 1226 29.0
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 7.4e-85 320.1 970 31.3
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 2.4e-83 315.1 987 31.5
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.1e-80 306.2 1272 27.6
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.9e-80 305.4 1268 28.5
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.9e-80 305.4 1268 28.5
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.6e-79 302.4 991 30.6
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.7e-79 301.6 987 30.9
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.0e-78 298.1 1019 28.5
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 3.0e-78 298.1 1205 28.3
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 2.8e-76 291.6 1255 26.1
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 3.7e-76 291.2 1251 27.1
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.1e-75 289.7 1289 27.8
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 2.6e-74 285.0 1222 27.7
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 5.5e-72 277.3 1153 27.9
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 1.2e-71 276.2 1139 27.6
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.4e-70 272.7 1282 28.1
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 6.7e-70 270.4 1086 27.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.1e-67 263.1 539 36.7
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 1.1e-67 263.1 1261 27.8
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 6.5e-65 253.8 1237 26.8
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.5e-64 251.9 870 29.2
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 2.1e-63 248.8 1257 26.6
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.2e-61 243.0 849 30.9
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 9.7e-61 240.0 1316 25.5
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 2.8e-60 238.4 987 28.1
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 2.2e-57 228.8 1062 27.1
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 3.2e-56 224.9 1301 26.1
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 4.4e-53 214.5 482 36.1
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 3.5e-50 204.9 1243 26.7
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 7.7e-50 203.8 803 28.6
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 7.2e-48 197.2 1016 27.7
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.8e-46 192.6 988 27.3
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.0e-46 191.4 175 61.7
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.2e-45 189.9 978 27.0
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.2e-42 179.9 960 26.2
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 1.0e-41 176.8 1016 26.3
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.3e-41 175.6 961 25.9
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 3.8e-41 174.9 1000 26.1
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.9e-40 172.6 994 26.3
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.4e-38 166.4 1021 26.2
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 4.0e-38 164.9 999 26.8
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.0e-37 162.5 723 27.2
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 8.3e-36 157.1 965 27.0
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 8.3e-36 157.1 444 30.6
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 5.4e-35 154.5 1036 27.1
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 3.9e-33 148.3 997 25.5
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 8.6e-33 147.1 1057 23.9
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 1.1e-32 146.7 1370 24.1
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.6e-31 142.9 1334 23.7
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.6e-31 142.9 1330 23.5
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.8e-31 142.1 1339 24.6
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 2.3e-30 139.0 525 29.7
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 6.8e-30 137.5 1330 23.5
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 9.8e-29 133.7 1199 23.6
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 1.7e-28 132.9 963 25.8
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 7.0e-27 127.5 924 24.6
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 3.5e-26 125.2 345 32.5
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 3.3e-24 118.6 508 25.6
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 6.2e-23 114.4 1206 24.2
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.2e-21 110.2 1108 21.5
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 2.0e-21 109.4 425 27.3
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.6e-21 109.0 1127 23.2
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 1.3e-20 106.7 220 37.3
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.3e-20 106.7 762 25.6
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 9.2e-19 100.5 982 23.7
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.0e-17 97.1 1173 22.9
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.3e-17 95.9 1398 23.1
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 1.5e-16 93.2 427 28.3
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 5.6e-16 91.3 267 30.3
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 3.6e-15 88.6 276 32.6
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 4.7e-15 88.2 667 23.1
QL09p006814 Quercus lobata HOM05D006657 ORTHO05D005964 8.1e-15 87.4 86 51.2
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 5.2e-14 84.7 441 25.6
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 8.9e-14 84.0 353 28.3
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 5.8e-13 81.3 618 22.5
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 9.9e-13 80.5 531 22.2
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.7e-12 79.7 300 28.0
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 4.9e-12 78.2 518 24.7
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 6.4e-12 77.8 229 28.4
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 6.4e-12 77.8 440 25.9
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 6.4e-12 77.8 82 43.9
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 5.4e-11 74.7 421 24.9
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 5.4e-11 74.7 661 23.3
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 9.2e-11 73.9 530 22.8
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 1.2e-10 73.6 665 20.8
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 1.6e-10 73.2 316 27.2
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 2.7e-10 72.4 242 27.7
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 7.8e-10 70.9 959 20.1
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 8.7e-09 67.4 197 29.4
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 8.7e-09 67.4 197 29.4
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 1.1e-08 67.0 216 30.1
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-08 67.0 341 24.9
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 1.1e-08 67.0 341 24.9
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.9e-08 66.2 366 24.6
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 1.9e-08 66.2 287 24.7
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 1.9e-08 66.2 287 24.7
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.9e-08 66.2 287 24.7
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 2.5e-08 65.9 436 23.6
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 3.3e-08 65.5 424 24.3
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 4.3e-08 65.1 217 29.0
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 4.3e-08 65.1 520 22.3
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 4.3e-08 65.1 520 22.3
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 4.3e-08 65.1 402 25.1
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 9.6e-08 63.9 235 27.2
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 9.6e-08 63.9 235 27.2
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 1.2e-07 63.5 235 28.1
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 2.8e-07 62.4 271 26.6
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 3.6e-07 62.0 310 25.5
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 1.1e-06 60.5 430 23.0
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 1.4e-06 60.1 409 23.2
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 2.4e-06 59.3 446 22.9
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 3.1e-06 58.9 444 21.8


User provided reference genes

Program Settings