Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 0.0e+00 1402.9 763 100.0
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 3.6e-303 1044.6 763 76.7
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-302 1042.7 763 76.7
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.1e-299 1033.1 766 76.4
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.2e-293 1013.1 767 73.5
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 3.1e-270 935.3 766 67.9
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 3.7e-260 901.7 812 62.8
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 6.4e-260 901.0 766 65.9
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 3.3e-248 862.1 767 64.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 6.4e-244 847.8 764 64.0
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 5.1e-241 838.2 766 63.6
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.5e-240 836.6 765 61.4
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 9.6e-240 833.9 765 62.5
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.2e-239 831.2 762 63.5
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 8.1e-239 830.9 765 61.7
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.4e-238 830.1 765 61.8
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 9.0e-238 827.4 764 64.5
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 9.9e-237 823.9 767 64.1
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 8.4e-236 820.8 702 66.4
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.4e-235 818.1 767 60.8
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.4e-235 818.1 769 61.8
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 4.6e-234 815.1 765 62.7
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 6.0e-234 814.7 761 62.8
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.7e-231 805.4 763 59.0
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 4.0e-230 802.0 766 61.6
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-228 797.3 766 61.4
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 3.8e-228 795.4 767 61.3
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.2e-227 792.3 765 59.6
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.2e-227 792.3 762 59.7
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 9.3e-227 790.8 760 59.9
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 4.6e-226 788.5 766 58.6
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.7e-225 784.6 766 61.6
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.5e-224 783.5 766 61.6
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 3.1e-222 775.8 812 55.9
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.0e-221 773.1 764 57.9
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.7e-220 770.0 766 60.3
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 5.0e-220 768.5 766 58.1
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 3.2e-219 765.8 769 59.3
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 3.2e-219 765.8 765 58.2
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.2e-218 763.8 770 57.3
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 6.1e-218 761.5 684 64.5
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.9e-218 761.1 766 60.8
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.8e-217 760.0 766 60.6
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 5.1e-217 758.4 766 58.4
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.1e-216 757.3 767 56.1
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 1.9e-216 756.5 767 58.9
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 7.4e-216 754.6 765 57.8
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.6e-215 753.4 767 56.5
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 3.7e-215 752.3 766 60.6
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.9e-212 742.7 767 57.9
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.9e-212 742.7 818 53.7
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.2e-211 739.2 772 54.4
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 5.5e-211 738.4 771 56.5
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.6e-210 735.3 767 57.6
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.0e-209 734.2 764 57.6
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.0e-208 729.9 768 57.8
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.3e-207 727.2 689 60.4
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 2.8e-207 726.1 768 55.5
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 8.2e-207 724.5 767 54.9
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 1.2e-205 720.7 763 56.6
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.6e-205 719.5 765 55.3
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.0e-204 715.3 729 56.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.4e-198 697.2 765 56.6
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.4e-198 697.2 741 54.7
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.2e-197 694.1 764 55.9
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.5e-196 688.0 765 56.1
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 4.2e-195 685.6 771 54.6
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 2.1e-194 683.3 765 54.0
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.1e-194 681.8 765 56.1
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.0e-194 681.4 767 53.3
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.4e-193 680.6 789 53.2
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.6e-189 667.2 735 55.8
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 5.9e-189 665.2 781 50.1
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.3e-185 653.3 768 53.1
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 6.8e-185 651.7 804 52.5
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.2e-184 651.0 766 51.4
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.0e-184 650.2 767 53.1
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.8e-183 646.4 749 51.3
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 3.1e-182 642.9 768 50.9
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 7.0e-182 641.7 763 52.8
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.4e-177 627.5 721 52.6
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.8e-177 627.1 736 53.5
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.3e-175 620.9 768 49.2
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.3e-175 618.2 765 50.1
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-173 614.4 773 50.3
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 8.6e-172 608.2 761 52.2
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.9e-171 607.1 765 51.0
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.1e-170 603.6 716 53.1
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.8e-170 603.2 765 51.8
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 3.0e-169 599.7 761 48.5
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 3.7e-167 592.8 753 48.6
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 8.3e-167 591.7 773 49.0
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.1e-166 591.3 705 54.2
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 7.0e-166 588.6 765 49.5
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.3e-164 583.6 764 50.1
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 8.6e-164 581.6 544 61.0
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.8e-162 576.6 764 48.8
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 8.0e-162 575.1 705 52.8
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.9e-158 563.9 614 54.4
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.6e-157 560.8 659 51.9
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 7.3e-155 552.0 767 48.0
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.7e-151 540.8 707 48.9
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.6e-149 534.3 740 48.1
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 6.0e-149 532.3 757 46.8
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 2.3e-148 530.4 765 45.8
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 3.9e-148 529.6 700 47.9
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.7e-143 514.2 643 50.4
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.9e-142 510.8 642 50.5
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 9.6e-139 498.4 755 46.4
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 6.2e-138 495.7 791 44.0
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 5.4e-134 482.6 680 49.0
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 3.8e-127 459.9 516 54.1
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.1e-126 458.4 636 50.0
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.4e-126 458.0 649 49.0
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 2.1e-125 454.1 779 41.2
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 2.7e-125 453.8 637 48.7
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.0e-124 451.8 729 43.8
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.3e-124 450.7 636 48.7
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.9e-124 449.9 773 41.7
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.5e-123 447.2 638 48.6
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 9.9e-120 435.3 773 40.1
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 2.9e-119 433.7 635 48.2
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 8.4e-119 432.2 765 41.2
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 3.0e-116 423.7 775 40.0
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.5e-115 421.4 645 47.6
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 2.6e-112 410.6 637 46.9
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.2e-111 407.5 639 46.2
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.2e-111 407.5 637 45.4
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.1e-110 405.2 741 39.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.3e-108 397.5 590 46.1
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 2.5e-107 394.0 590 45.9
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.8e-106 390.6 640 46.1
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 4.8e-106 389.8 589 46.7
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 7.4e-99 365.9 594 44.6
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 2.5e-94 350.9 377 55.2
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-86 325.5 259 71.8
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-86 325.5 259 71.8
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-81 308.9 316 57.9
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 6.1e-77 293.1 336 55.1
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.8e-76 291.6 590 38.5
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.7e-74 285.0 912 32.5
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 3.0e-68 264.2 420 41.9
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 9.8e-67 259.2 841 33.2
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 5.2e-60 236.9 637 34.9
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 5.7e-59 233.4 813 29.2
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.7e-48 198.0 529 33.6
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.8e-45 188.0 155 68.4
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.6e-40 172.2 269 44.2
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 7.8e-40 169.9 644 30.3
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.3e-39 169.1 155 61.3
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 3.0e-39 167.9 155 61.3
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 7.5e-35 153.3 165 53.9
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 7.3e-30 136.7 130 59.2
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.2e-26 125.2 117 56.4
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 6.4e-26 123.6 119 63.0
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 7.8e-24 116.7 209 38.3
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 3.1e-20 104.8 166 41.0
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 3.0e-15 88.2 77 61.0
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 6.6e-15 87.0 111 49.5
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 8.7e-15 86.7 87 56.3
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 8.7e-15 86.7 87 56.3
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 4.3e-14 84.3 102 47.1
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 4.8e-13 80.9 196 35.7
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 8.1e-13 80.1 209 33.0
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 1.1e-12 79.7 94 51.1
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 9.9e-11 73.2 63 61.9
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 2.2e-10 72.0 399 27.1
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 2.2e-10 72.0 196 33.7
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 3.8e-10 71.2 332 29.2
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 5.4e-09 67.4 34 91.2
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 7.1e-09 67.0 72 48.6
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 2.1e-08 65.5 109 34.9
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 2.7e-08 65.1 68 48.5
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 1.8e-07 62.4 192 32.3
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.8e-07 62.4 68 45.6
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 3.0e-07 61.6 65 56.9


User provided reference genes

Program Settings