Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 3.0e-167 592.0 361 100.0
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 3.7e-109 399.1 338 80.2
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 9.2e-108 394.4 336 79.8
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 7.3e-105 384.8 331 77.0
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.0e-98 362.8 339 74.9
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.9e-98 362.5 352 71.3
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.3e-97 359.0 352 70.7
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.8e-96 356.3 369 68.3
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.8e-95 353.6 340 74.7
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.8e-95 353.6 339 73.2
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-94 350.9 346 70.5
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-94 350.9 346 70.5
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 3.4e-94 349.4 353 64.3
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 4.4e-94 349.0 361 69.5
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 4.4e-94 349.0 344 71.5
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.3e-93 347.4 336 72.9
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.7e-93 347.1 337 72.7
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.9e-93 346.3 316 76.6
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 3.8e-93 345.9 346 71.4
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 6.4e-93 345.1 334 72.5
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 6.4e-93 345.1 337 72.7
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.4e-93 344.7 334 72.5
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.1e-92 344.4 341 70.7
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.1e-92 344.4 356 68.8
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.9e-92 343.6 338 72.5
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.2e-92 342.8 348 69.5
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 4.6e-91 339.0 336 69.9
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 6.0e-91 338.6 340 70.9
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 6.0e-91 338.6 367 67.6
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.0e-90 337.8 341 70.1
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.3e-90 337.4 286 80.1
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.1e-89 334.3 342 70.8
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 5.6e-89 332.0 369 66.1
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 5.6e-89 332.0 346 69.9
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.2e-88 330.9 340 70.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.6e-88 330.5 342 69.0
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 8.1e-88 328.2 371 63.1
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.4e-87 327.4 334 68.3
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.8e-87 327.0 330 70.6
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 3.1e-87 326.2 340 69.4
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 3.1e-87 326.2 335 68.1
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 8.9e-87 324.7 394 49.5
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 8.9e-87 324.7 332 70.5
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 8.9e-87 324.7 335 68.1
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.5e-86 323.9 337 68.5
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 5.8e-86 322.0 344 67.2
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.6e-86 321.6 298 74.8
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.9e-85 319.7 340 68.8
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 2.9e-85 319.7 341 67.4
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.9e-85 318.9 323 69.3
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 8.4e-85 318.2 332 65.1
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.1e-84 317.8 353 65.7
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.1e-84 317.8 339 68.7
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.4e-84 317.4 330 68.2
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.4e-84 316.6 291 75.9
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.2e-83 314.3 286 74.5
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.1e-83 313.5 337 65.3
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.7e-83 313.2 237 71.3
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.6e-83 312.4 339 68.1
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.6e-83 312.4 339 68.1
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 6.0e-83 312.0 336 64.6
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 7.8e-83 311.6 286 74.5
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.0e-82 311.2 343 66.2
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.0e-82 311.2 286 74.1
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 6.6e-82 308.5 339 67.0
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 6.6e-82 308.5 349 65.0
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.1e-81 307.8 340 66.2
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.9e-81 307.0 349 65.9
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 4.3e-81 305.8 309 70.6
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 5.6e-81 305.4 336 63.4
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.6e-80 303.9 336 60.4
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 6.2e-80 302.0 346 63.0
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.1e-79 301.2 344 65.4
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 9.0e-79 298.1 345 63.2
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.2e-78 297.7 343 63.8
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 7.6e-78 295.0 345 64.3
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.3e-77 294.3 343 63.3
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.3e-77 294.3 341 63.6
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.9e-77 293.1 284 71.5
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 3.8e-77 292.7 338 63.3
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.1e-76 291.2 302 70.2
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.1e-76 291.2 345 62.6
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.9e-76 290.4 335 66.0
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 5.4e-76 288.9 322 67.1
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 3.5e-75 286.2 350 62.9
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 3.5e-75 286.2 323 64.4
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 7.9e-75 285.0 228 63.2
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.0e-74 284.6 335 63.9
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.9e-73 280.4 343 60.3
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 1.9e-73 280.4 332 59.9
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.3e-73 279.6 244 60.2
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 9.6e-73 278.1 335 62.4
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.3e-72 277.7 285 63.2
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.2e-70 271.2 162 79.6
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 2.0e-70 270.4 343 60.9
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.4e-68 263.5 337 60.8
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 3.2e-68 263.1 339 60.8
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.2e-68 262.7 212 65.1
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 6.0e-67 258.8 162 75.3
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.0e-66 258.1 411 53.8
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.0e-66 258.1 312 64.7
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 3.9e-66 256.1 312 64.1
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 6.7e-66 255.4 300 62.7
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.5e-65 253.4 337 59.9
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-64 250.8 367 41.7
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.8e-63 247.3 318 45.0
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 6.9e-63 245.4 339 58.1
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.2e-62 244.6 237 76.4
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.3e-61 241.1 339 58.1
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 7.9e-59 231.9 298 59.4
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 3.3e-57 226.5 159 69.2
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.5e-49 201.1 276 59.4
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 4.1e-47 193.0 194 82.0
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.5e-46 191.0 183 56.3
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 7.7e-46 188.7 180 55.6
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 3.8e-45 186.4 194 79.9
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.1e-44 184.9 241 66.0
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.2e-43 181.4 264 58.7
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 7.9e-43 178.7 162 57.4
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.1e-39 166.8 214 43.5
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.0e-34 151.8 278 51.8
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 3.7e-32 143.3 161 47.8
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 2.4e-31 140.6 286 49.0
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.4e-28 128.6 173 43.9
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.4e-26 124.8 170 74.7
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.0e-26 123.6 173 42.8
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.6e-25 120.6 144 85.4
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.5e-25 119.0 171 42.7
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 4.1e-23 113.2 80 68.8
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.0e-19 99.0 128 85.2
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.8e-18 97.8 107 47.7
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 6.8e-18 95.9 65 70.8
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.8e-18 95.5 81 60.5
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.3e-16 91.7 111 49.5
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 4.8e-16 89.7 134 63.4
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.9e-14 82.8 135 80.0
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 8.8e-10 68.9 56 62.5
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.7e-09 66.2 38 73.7
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 2.8e-08 63.9 50 72.0
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 7.0e-07 59.3 38 65.8
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 2.0e-06 57.8 38 71.1
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 2.7e-06 57.4 49 55.1
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 4.5e-06 56.6 38 65.8
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 4.5e-06 56.6 60 48.3
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 7.8e-06 55.8 56 55.4


User provided reference genes

Program Settings