Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G181100 Carya illinoinensis HOM05D000341 ORTHO05D001197 1.0e-58 229.9 120 100.0
Thecc.02G261700 Theobroma cacao HOM05D000341 ORTHO05D001197 3.1e-28 128.6 131 58.8
Prupe.1G246100 Prunus persica HOM05D000341 ORTHO05D001197 1.6e-27 126.3 122 64.8
GSVIVG01000538001 Vitis vinifera HOM05D000341 ORTHO05D001197 1.3e-26 123.2 121 57.9
Manes.12G022000 Manihot esculenta HOM05D000341 ORTHO05D001197 2.5e-25 119.0 120 59.2
CANSAT01G3068 Cannabis sativa HOM05D000341 ORTHO05D001197 1.6e-24 116.3 118 56.8
FAN17G2998 Fragaria x ananassa HOM05D000341 ORTHO05D001197 2.1e-24 115.9 120 55.8
FAN22G1948 Fragaria x ananassa HOM05D000341 ORTHO05D001197 6.1e-24 114.4 120 55.0
FvH4_4g25700 Fragaria vesca HOM05D000341 ORTHO05D001197 1.0e-23 113.6 120 55.0
QL03p057679 Quercus lobata HOM05D000341 ORTHO05D001197 1.0e-23 113.6 131 55.7
Gohir.D01G151600 Gossypium hirsutum HOM05D000341 ORTHO05D001197 3.0e-23 112.1 134 53.7
Potri.010G047100 Populus trichocarpa HOM05D000341 ORTHO05D001197 3.0e-23 112.1 118 59.3
Gohir.A01G158800 Gossypium hirsutum HOM05D000341 ORTHO05D001197 6.7e-23 110.9 134 53.0
Manes.13G023100 Manihot esculenta HOM05D000341 ORTHO05D001197 6.7e-23 110.9 117 57.3
Gorai.002G187900 Gossypium raimondii HOM05D000341 ORTHO05D001197 8.8e-23 110.5 134 53.7
Dinv14729 Davidia involucrata HOM05D000341 ORTHO05D001197 1.2e-22 110.2 112 60.7
Ciclev10032987m.g Citrus clementina HOM05D000341 ORTHO05D001197 1.5e-22 109.8 126 54.0
FAN07G2103 Fragaria x ananassa HOM05D000341 ORTHO05D001197 2.0e-22 109.4 119 52.9
RcHm_v2.0_Chr4g0433131 Rosa chinensis HOM05D000341 ORTHO05D001197 2.6e-22 109.0 118 56.8
Glyma.18G013800 Glycine max HOM05D000341 ORTHO05D001197 4.4e-22 108.2 113 57.5
Hma1.2p1_0079F.1_g041030 Hydrangea macrophylla HOM05D000341 ORTHO05D001197 4.4e-22 108.2 110 59.1
Nn3g16690 Nelumbo nucifera HOM05D000341 ORTHO05D001197 2.2e-21 105.9 112 57.1
Oeu038633.1 Olea europaea HOM05D000341 ORTHO05D001197 2.2e-21 105.9 129 46.5
Duzib268G0199 Durio zibethinus HOM05D000341 ORTHO05D001197 2.8e-21 105.5 142 49.3
MD13G1099900 Malus domestica HOM05D000341 ORTHO05D001197 3.7e-21 105.1 117 57.3
Potri.008G185800 Populus trichocarpa HOM05D000341 ORTHO05D001197 3.7e-21 105.1 111 60.4
CSS0009346 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D001197 4.8e-21 104.8 126 50.0
Duzib251G0186 Durio zibethinus HOM05D000341 ORTHO05D001197 6.3e-21 104.4 143 45.5
ClCG05G025820 Citrullus lanatus HOM05D000341 ORTHO05D001197 8.3e-21 104.0 112 57.1
Cpa.g.sc33.34 Carica papaya HOM05D000341 ORTHO05D001197 1.8e-20 102.8 124 55.6
Oeu001703.1 Olea europaea HOM05D000341 ORTHO05D001197 4.1e-20 101.7 128 47.7
Cfa009223 Carpinus fangiana HOM05D000341 ORTHO05D001197 5.3e-20 101.3 118 55.9
Medtr3g086630 Medicago truncatula HOM05D000341 ORTHO05D001197 7.0e-20 100.9 118 51.7
MD16G1100900 Malus domestica HOM05D000341 ORTHO05D001197 1.2e-19 100.1 117 53.8
TPR.G30532 Trifolium pratense HOM05D000341 ORTHO05D001197 2.0e-19 99.4 117 53.8
Carub.0001s2553 Capsella rubella HOM05D000341 ORTHO05D001197 4.5e-19 98.2 112 54.5
Sed0005832 Sechium edule HOM05D000341 ORTHO05D001197 7.7e-19 97.4 119 51.3
MELO3C011942.2 Cucumis melo HOM05D000341 ORTHO05D001197 1.3e-18 96.7 119 52.1
Atru.chr11.2150 Acer truncatum HOM05D000341 ORTHO05D001197 3.8e-18 95.1 133 51.1
CARHR026510 Cardamine hirsuta HOM05D000341 ORTHO05D001197 5.0e-18 94.7 113 53.1
AT1G67856 Arabidopsis thaliana HOM05D000341 ORTHO05D001197 1.1e-17 93.6 110 49.1
THA.LOC104825557 Tarenaya hassleriana HOM05D000341 ORTHO05D001197 1.1e-17 93.6 122 50.8
Thhalv10009051m.g Eutrema salsugineum HOM05D000341 ORTHO05D001197 1.5e-17 93.2 112 50.9
Sp1g23210 Schrenkiella parvula HOM05D000341 ORTHO05D001197 1.5e-17 93.2 110 50.0
Glyma.11G243400 Glycine max HOM05D000459 ORTHO05D001197 7.2e-17 90.9 111 51.4
THA.LOC104807815 Tarenaya hassleriana HOM05D000341 ORTHO05D001197 1.2e-16 90.1 119 49.6
Phvul.001G255200 Phaseolus vulgaris HOM05D000341 ORTHO05D001197 1.6e-16 89.7 113 48.7
AL1G40350 Arabidopsis lyrata HOM05D000341 ORTHO05D001197 3.6e-16 88.6 110 50.9
AT1G24580 Arabidopsis thaliana HOM05D000341 ORTHO05D001197 3.6e-16 88.6 110 51.8
BraA08t34613Z Brassica rapa HOM05D000341 ORTHO05D001197 4.7e-16 88.2 113 48.7
A08p26650 Brassica napus HOM05D000341 ORTHO05D001197 8.0e-16 87.4 113 47.8
MSTRG.7944 Avicennia marina HOM05D000341 ORTHO05D001197 1.0e-15 87.0 129 45.0
BcaB03g12053 Brassica carinata HOM05D000341 ORTHO05D001197 1.0e-15 87.0 110 47.3
AL2G26610 Arabidopsis lyrata HOM05D000341 ORTHO05D001197 1.8e-15 86.3 110 47.3
Oeu026218.1 Olea europaea HOM05D000341 ORTHO05D001197 1.8e-15 86.3 130 43.8
Sc04g0009570 Simmondsia chinensis HOM05D000341 ORTHO05D001197 1.8e-15 86.3 122 47.5
C03p73350 Brassica napus HOM05D000341 ORTHO05D001197 3.0e-15 85.5 114 50.0
BolC3t19632H Brassica oleracea HOM05D000341 ORTHO05D001197 3.0e-15 85.5 114 50.0
Lj6g0007345 Lotus japonicus HOM05D000341 ORTHO05D001197 5.2e-15 84.7 116 50.9
PSO063G4244 Papaver somniferum HOM05D000341 ORTHO05D001197 6.8e-15 84.3 120 46.7
ATR0824G038 Amborella trichopoda HOM05D000341 ORTHO05D001197 1.2e-14 83.6 117 48.7
PSO754G0016 Papaver somniferum HOM05D000341 ORTHO05D001197 1.5e-14 83.2 118 44.9
Rhsim12G0109400 Rhododendron simsii HOM05D000341 ORTHO05D001197 1.5e-14 83.2 115 47.0
MD08G1159300 Malus domestica HOM05D000341 ORTHO05D001197 2.0e-14 82.8 105 50.5
DCAR_026508 Daucus carota HOM05D000341 ORTHO05D001197 5.7e-14 81.3 110 45.5
CSS0048061 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D001197 9.8e-14 80.5 123 42.3
TAR371G1144 Trochodendron aralioides HOM05D000341 ORTHO05D001197 9.8e-14 80.5 117 44.4
Sed0002660 Sechium edule HOM05D000341 ORTHO05D001197 2.2e-13 79.3 123 48.8
CSS0006591 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D001197 2.8e-13 79.0 123 41.5
Migut.K00608 Erythranthe guttata HOM05D000341 ORTHO05D001197 2.8e-13 79.0 120 45.0
TWI36G0417 Tripterygium wilfordii HOM05D000341 ORTHO05D001197 3.7e-13 78.6 78 57.7
CsaV3_5G031030 Cucumis sativus L. HOM05D000341 ORTHO05D001197 8.3e-13 77.4 81 60.5
vmacro16190 Vaccinium macrocarpon HOM05D000341 ORTHO05D001197 8.3e-13 77.4 113 46.0
CARHR060500 Cardamine hirsuta HOM05D000341 ORTHO05D001197 1.4e-12 76.6 110 42.7
Haze_12259 Corylus avellana HOM05D000421 ORTHO05D000855 1.8e-12 76.3 112 51.8
Lalb_Chr11g0075491 Lupinus albus HOM05D000341 ORTHO05D001197 1.8e-12 76.3 118 43.2
CSS0023029 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D001197 5.4e-12 74.7 92 51.1
Aa31LG7G9470 Aethionema arabicum HOM05D000341 ORTHO05D001197 7.0e-12 74.3 74 59.5
arahy.Tifrunner.gnm1.ann1.5WW9LS Arachis hypogaea HOM05D000341 ORTHO05D001197 1.2e-11 73.6 109 41.3
Actinidia37437 Actinidia chinensis HOM05D000341 ORTHO05D001197 2.0e-11 72.8 78 59.0
Sc14g0008770 Simmondsia chinensis HOM05D000341 ORTHO05D001197 2.9e-10 68.9 127 40.9
unitig_747.g21158 Utricularia gibba HOM05D000341 ORTHO05D001197 1.5e-09 66.6 111 44.1
FAN12G0072 Fragaria x ananassa HOM05D000341 ORTHO05D001197 1.2e-08 63.5 75 46.7
Lalb_Chr10g0094491 Lupinus albus HOM05D000341 ORTHO05D001197 4.7e-08 61.6 115 34.8
BcaC01g01654 Brassica carinata HOM05D000341 ORTHO05D001197 1.0e-07 60.5 114 41.2
SEGI_32549 Sequoiadendron giganteum HOM05D000341 ORTHO05D001197 1.0e-07 60.5 124 37.1
arahy.Tifrunner.gnm1.ann1.KWP8KK Arachis hypogaea HOM05D000341 ORTHO05D001197 1.8e-07 59.7 117 35.9
COL.COLO4_19653 Corchorus olitorius HOM05D000341 ORTHO05D001197 1.8e-07 59.7 113 37.2
LjContig00155g0015511 Lotus japonicus HOM05D000341 ORTHO05D001197 1.8e-07 59.7 110 34.5
Phvul.006G005100 Phaseolus vulgaris HOM05D000341 ORTHO05D001197 1.8e-07 59.7 110 34.5
Duzib211G0333 Durio zibethinus HOM05D000341 ORTHO05D001197 3.0e-07 58.9 113 35.4
Glyma.13G009100 Glycine max HOM05D000341 ORTHO05D001197 3.0e-07 58.9 112 38.4
MD09G1131400 Malus domestica HOM05D000341 ORTHO05D001197 4.0e-07 58.5 115 38.3
THA.LOC104819029 Tarenaya hassleriana HOM05D000341 ORTHO05D001197 4.0e-07 58.5 119 33.6
ATR0751G018 Amborella trichopoda HOM05D000341 ORTHO05D001197 5.2e-07 58.2 108 37.0
Gorai.001G099600 Gossypium raimondii HOM05D000341 ORTHO05D001197 6.8e-07 57.8 112 36.6
Cpa.g.sc136.54 Carica papaya HOM05D000341 ORTHO05D001197 8.9e-07 57.4 122 34.4
Gohir.D07G093000 Gossypium hirsutum HOM05D000341 ORTHO05D001197 8.9e-07 57.4 112 36.6
TAR627G0589 Trochodendron aralioides HOM05D000341 ORTHO05D001197 8.9e-07 57.4 119 33.6
BcaB06g26771 Brassica carinata HOM05D000341 ORTHO05D001197 1.2e-06 57.0 122 34.4
CDE10G0873 Ceratophyllum demersum HOM05D002176 ORTHO05D002598 1.2e-06 57.0 110 33.6
Haze_12587 Corylus avellana HOM05D000341 ORTHO05D001197 1.2e-06 57.0 121 34.7
arahy.Tifrunner.gnm1.ann1.SN2A15 Arachis hypogaea HOM05D000341 ORTHO05D001197 1.5e-06 56.6 123 34.1
Potri.014G170400 Populus trichocarpa HOM05D000341 ORTHO05D001197 1.5e-06 56.6 120 34.2
QL04p067026 Quercus lobata HOM05D000341 ORTHO05D001197 1.5e-06 56.6 117 35.0
Phvul.008G190100 Phaseolus vulgaris HOM05D000341 ORTHO05D001197 2.0e-06 56.2 117 35.0
TWI18G1292 Tripterygium wilfordii HOM05D000341 ORTHO05D001197 2.0e-06 56.2 116 36.2
CARHR102100 Cardamine hirsuta HOM05D000341 ORTHO05D001197 2.6e-06 55.8 127 33.1
Glyma.14G190300 Glycine max HOM05D000341 ORTHO05D001197 4.4e-06 55.1 117 34.2
VMungo0647G1267 Vigna mungo HOM05D000341 ORTHO05D001197 4.4e-06 55.1 117 35.0
BcaC06g35857 Brassica carinata HOM05D000341 ORTHO05D001197 5.7e-06 54.7 123 31.7
BolC7t41486H Brassica oleracea HOM05D000341 ORTHO05D001197 5.7e-06 54.7 123 31.7
Carub.0003s2594 Capsella rubella HOM05D000341 ORTHO05D001197 5.7e-06 54.7 125 32.0
Glyma.02G223600 Glycine max HOM05D000341 ORTHO05D001197 5.7e-06 54.7 118 34.7
Gohir.A07G088100 Gossypium hirsutum HOM05D000341 ORTHO05D001197 5.7e-06 54.7 111 35.1
Lj6g0020699 Lotus japonicus HOM05D000341 ORTHO05D001197 5.7e-06 54.7 114 36.0
MBI14_g46785_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 5.7e-06 54.7 116 37.1
Atru.chr6.3430 Acer truncatum HOM05D000341 ORTHO05D001197 7.5e-06 54.3 110 32.7
C07p10360 Brassica napus HOM05D000341 ORTHO05D001197 7.5e-06 54.3 123 31.7
Thhalv10002694m.g Eutrema salsugineum HOM05D000341 ORTHO05D001197 7.5e-06 54.3 118 36.4
Thecc.01G199400 Theobroma cacao HOM05D000341 ORTHO05D001197 7.5e-06 54.3 114 33.3
CDE10G1170 Ceratophyllum demersum HOM05D000341 ORTHO05D001197 9.8e-06 53.9 110 33.6
Sabra14G0129900 Salix brachista HOM05D000341 ORTHO05D001197 9.8e-06 53.9 120 34.2
Sp3g23140 Schrenkiella parvula HOM05D000341 ORTHO05D001197 9.8e-06 53.9 126 33.3
TWI75G0015 Tripterygium wilfordii HOM05D000341 ORTHO05D001197 9.8e-06 53.9 119 36.1


User provided reference genes

Program Settings