Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G180600 Carya illinoinensis HOM05D009786 ORTHO05D012348 5.4e-80 300.8 142 100.0
CiPaw.05G180500 Carya illinoinensis HOM05D009786 ORTHO05D012348 2.4e-75 285.4 141 93.6
CiPaw.05G180400 Carya illinoinensis HOM05D009786 ORTHO05D012348 7.6e-74 280.4 142 91.5
CiPaw.05G180300 Carya illinoinensis HOM05D009786 ORTHO05D012348 1.9e-72 275.8 137 93.4
CiPaw.06G066700 Carya illinoinensis HOM05D009786 ORTHO05D012348 1.8e-62 242.7 140 80.7
CiPaw.06G066800 Carya illinoinensis HOM05D009786 ORTHO05D012348 1.8e-62 242.7 140 80.7
Cfa009224 Carpinus fangiana HOM05D009786 ORTHO05D012348 4.8e-60 234.6 137 80.3
Haze_12260 Corylus avellana HOM05D009786 ORTHO05D012348 1.1e-59 233.4 140 79.3
QL03p057604 Quercus lobata HOM05D009786 ORTHO05D012348 2.5e-56 222.2 137 75.2
QL03p057632 Quercus lobata HOM05D009786 ORTHO05D012348 4.8e-52 208.0 130 71.5
Prupe.1G219700 Prunus persica HOM05D009786 ORTHO05D012348 8.0e-15 84.3 144 32.6
Prupe.1G060100 Prunus persica HOM05D009786 ORTHO05D012348 1.4e-14 83.6 135 34.8
Prupe.1G059600 Prunus persica HOM05D009786 ORTHO05D012348 1.8e-14 83.2 141 33.3
Prupe.1G043900 Prunus persica HOM05D000256 ORTHO05D000119 4.0e-14 82.0 142 33.8
Prupe.1G060000 Prunus persica HOM05D009786 ORTHO05D012348 2.0e-13 79.7 144 32.6
Prupe.1G059500 Prunus persica HOM05D009786 ORTHO05D012348 4.4e-13 78.6 138 33.3
Prupe.8G208500 Prunus persica HOM05D000256 ORTHO05D000119 2.2e-12 76.3 133 33.8
RcHm_v2.0_Chr3g0448291 Rosa chinensis HOM05D000256 ORTHO05D000119 2.2e-12 76.3 135 33.3
TAR365G0089 Trochodendron aralioides HOM05D000256 ORTHO05D000119 2.8e-12 75.9 137 35.0
TAR365G0192 Trochodendron aralioides HOM05D000256 ORTHO05D000119 8.3e-12 74.3 137 35.0
QL04p080627 Quercus lobata HOM05D009786 ORTHO05D000119 1.4e-11 73.6 114 36.8
Prupe.4G236000 Prunus persica HOM05D000256 ORTHO05D000119 2.4e-11 72.8 111 35.1
Prupe.8G208600 Prunus persica HOM05D000256 ORTHO05D000119 2.4e-11 72.8 137 32.8
FAN05G2293 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.2e-10 70.5 126 34.1
Prupe.1G219600 Prunus persica HOM05D009786 ORTHO05D012348 1.2e-10 70.5 112 33.9
Thecc.01G232200 Theobroma cacao HOM05D000256 ORTHO05D000119 1.2e-10 70.5 130 32.3
Gorai.004G058000 Gossypium raimondii HOM05D000256 ORTHO05D000119 3.5e-10 68.9 132 31.8
Gohir.A08G046400 Gossypium hirsutum HOM05D000256 ORTHO05D000119 5.9e-10 68.2 132 31.1
PGR044G1572 Punica granatum HOM05D000256 ORTHO05D000119 5.9e-10 68.2 115 32.2
Cpa.g.sc8.196 Carica papaya HOM05D009786 ORTHO05D012348 7.8e-10 67.8 117 34.2
Duzib187G0570 Durio zibethinus HOM05D000256 ORTHO05D000119 7.8e-10 67.8 143 32.9
FvH4_4g05642 Fragaria vesca HOM05D061516 ORTHO05D035238 1.0e-09 67.4 118 33.9
FAN06G4947 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.3e-09 67.0 126 36.5
TWI14G0081 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 2.9e-09 65.9 131 28.2
FAN14G0909 Fragaria x ananassa HOM05D000256 ORTHO05D000119 5.0e-09 65.1 126 31.7
Carub.0002s1211 Capsella rubella HOM05D008344 ORTHO05D011034 1.1e-08 63.9 147 31.3
FAN17G1832 Fragaria x ananassa HOM05D009786 ORTHO05D012348 1.5e-08 63.5 124 33.1
RcHm_v2.0_Chr3g0448331 Rosa chinensis HOM05D000256 ORTHO05D000119 1.5e-08 63.5 126 31.0
EL10Ac4g09135 Beta vulgaris HOM05D009786 ORTHO05D000119 1.6e-07 60.1 144 33.3
FAN10G1492 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.6e-07 60.1 117 34.2
TWI14G0459 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 1.6e-07 60.1 128 25.8
Manes.03G171700 Manihot esculenta HOM05D000256 ORTHO05D000119 2.1e-07 59.7 111 32.4
FAN11G2936 Fragaria x ananassa HOM05D026323 ORTHO05D012348 2.8e-07 59.3 114 30.7
TAR362G1185 Trochodendron aralioides HOM05D000256 ORTHO05D000119 2.8e-07 59.3 138 31.2
Ciclev10007012m.g Citrus clementina HOM05D010815 ORTHO05D011855 3.6e-07 58.9 107 34.6
FvH4_3g21860 Fragaria vesca HOM05D026323 ORTHO05D012348 3.6e-07 58.9 114 30.7
Manes.03G171600 Manihot esculenta HOM05D000256 ORTHO05D000119 3.6e-07 58.9 137 29.9
Sc05g0002250 Simmondsia chinensis HOM05D000256 ORTHO05D000119 4.7e-07 58.5 110 30.9
TWI14G1030 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 4.7e-07 58.5 143 29.4
EL10Ac7g17821 Beta vulgaris HOM05D009786 ORTHO05D000119 8.0e-07 57.8 110 30.0
CiPaw.04G107900 Carya illinoinensis HOM05D000256 ORTHO05D000119 1.4e-06 57.0 114 30.7
QL09p044329 Quercus lobata HOM05D000256 ORTHO05D000119 1.4e-06 57.0 116 28.4
AL7G23410 Arabidopsis lyrata HOM05D008344 ORTHO05D011034 1.8e-06 56.6 138 28.3
EL10Ac7g17822 Beta vulgaris HOM05D009786 ORTHO05D000119 1.8e-06 56.6 125 30.4
EL10As7g23807 Beta vulgaris HOM05D000256 ORTHO05D000119 1.8e-06 56.6 106 35.8
Sc17g0002430 Simmondsia chinensis HOM05D009786 ORTHO05D000119 2.3e-06 56.2 145 24.8
Medtr1g069250 Medicago truncatula HOM05D000256 ORTHO05D000119 5.2e-06 55.1 153 28.1
Prupe.8G208800 Prunus persica HOM05D000256 ORTHO05D000119 5.2e-06 55.1 107 27.1
A01p29940 Brassica napus HOM05D003012 ORTHO05D002833 6.8e-06 54.7 141 33.3
BraA01t03124Z Brassica rapa HOM05D003012 ORTHO05D002833 6.8e-06 54.7 141 33.3
Sc17g0002440 Simmondsia chinensis HOM05D010190 ORTHO05D000119 6.8e-06 54.7 136 27.9
Thecc.01G232100 Theobroma cacao HOM05D000256 ORTHO05D000119 6.8e-06 54.7 110 30.0
Sed0020430 Sechium edule HOM05D000256 ORTHO05D000119 8.9e-06 54.3 149 27.5
Sc05g0002240 Simmondsia chinensis HOM05D000256 ORTHO05D000119 8.9e-06 54.3 143 26.6


User provided reference genes

Program Settings